RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CYP51A1Q16850 503 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TRMT5Q32P41 509 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SPDYE7PQ495Y7 208 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CD300EQ496F6 205 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF658BQ4V348 819 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 FBLN7Q53RD9 439 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PRR31Q5SQ13 230 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 C6orf136Q5SQH8 315 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SAXO2Q658L1 398 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 LAMTOR1Q6IAA8 161 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR4F3Q6IEY1 312 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 LRRC8EQ6NSJ5 796 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 FAM45BPQ6NSW5 357 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RHBDD2Q6NTF9 364 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ACOT7LQ6ZUV0 252 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SHFQ7M4L6 423 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ANKRD33Q7Z3H0 272 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RNF130Q86XS8 419 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SYT12Q8IV01 421 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 C10orf107Q8IVU9 208 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 BLIDQ8IZY5 108 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC34A3Q8N130 599 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 STPG2Q8N412 459 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 C4orf32Q8N8J7 132 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR10G3Q8NGC4 313 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR5AK3PQ8NH89 298 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TERB2Q8NHR7 220 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SMARCD2Q92925 531 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 NXNL1Q96CM4 212 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 BPIFA2Q96DR5 249 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM176AQ96HP8 235 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF354BQ96LW1 612 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 GPR137Q96N19 417 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RAB40CQ96S21 281 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZSWIM1Q9BR11 485 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 MCRIP2Q9BUT9 160 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ULBP2Q9BZM5 246 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CHRNA10Q9GZZ6 450 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM231Q9H6L2 316 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 WDR76Q9H967 626 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CACYBPQ9HB71 228 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SPHK2Q9NRA0 654 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TMEM181Q9P2C4 612 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 AMDHD2Q9Y303 409 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 IGLV3-22A0A075B6J6 115 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 A0A1B0GVI7 797 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR5H14A6NHG9 310 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TEX22C9J3V5 150 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 GYG2O15488 501 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SEMA7AO75326 666 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 UTS2O95399 124 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CST1P01037 141 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PDYNP01213 254 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 IGHV2-5P01817 119 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ALPLP05186 524 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR10J4P0C629 311 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 MYL2P10916 166 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CHI3L1P36222 383 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 HTR6P50406 440 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CNN1P51911 297 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TAS2R41P59536 307 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 STXBP1P61764 594 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 EFNB1P98172 346 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 EMX1Q04741 257 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 EGR4Q05215 589 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF844Q08AG5 666 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SMN1Q16637 294 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC36A2Q495M3 483 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 GAGE13Q4V321 117 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PYCR3Q53H96 274 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF789Q5FWF6 425 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 ZNF648Q5T619 568 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 GPRC6AQ5T6X5 926 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 RASSF6Q6ZTQ3 369 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 GRASPQ7Z6J2 395 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 COMMD2Q86X83 199 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PTOV1Q86YD1 416 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 AQP12AQ8IXF9 295 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 LINC00482Q8N8I6 264 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 Q8NA96 180 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 B3GNT7Q8NFL0 401 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 CADM4Q8NFZ8 388 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR2Z1Q8NG97 314 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR56A1Q8NGH5 318 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 OR9G4Q8NGQ1 327 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 EMG1Q92979 244 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 LHX4Q969G2 390 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 TRMT61AQ96FX7 289 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SPATA33Q96N06 139 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PAAF1Q9BRP4 392 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SYT11Q9BT88 431 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 MAP1LC3CQ9BXW4 147 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 NKX6-2Q9C056 277 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 UBE2ZQ9H832 354 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 SLC2A9Q9NRM0 540 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 HAO2Q9NYQ3 351 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 FOXJ2Q9P0K8 574 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 PEMTQ9UBM1 199 aa4.33□□□□□ -1.72
CCDC88A-209ENST00000456975 HSPB7Q9UBY9 170 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms