RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TPRKBQ9Y3C4 175 aa8.94□□□□□ -0.98
CD44-207ENST00000425428 DIDO1Q9BTC0 2240 aaKnown RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 A0A0G2JNJ9 132 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 FAM183AA6NL82 134 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 DLGAP1O14490 977 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 DENRO43583 198 aaKnown RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 SLC2A10O95528 541 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 IGHV3-9P01782 118 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 SPI1P17947 270 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 PAX7P23759 505 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 IL32P24001 234 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 APOFQ13790 326 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 MAD2L1BPQ15013 274 aaPredicted RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 OCLNQ16625 522 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 KLHL22Q53GT1 634 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 SLC25A30Q5SVS4 291 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 TSPO2Q5TGU0 170 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 OR7E24Q6IFN5 339 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 XKRXQ6PP77 449 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 Q6ZT83 130 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 MEPCEQ7L2J0 689 aaKnown RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 SSX8Q7RTT4 187 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 BTLAQ7Z6A9 289 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 DPPA2Q7Z7J5 298 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 CCDC36Q8IYA8 594 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 ENTHD1Q8IYW4 607 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 TMEM123Q8N131 208 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 OR9Q1Q8NGQ5 310 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 OR2AJ1Q8NGZ0 328 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 RHOXF1Q8NHV9 184 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 ALKBH3Q96Q83 286 aaPredicted RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 MOV10Q9HCE1 1003 aaKnown RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 KCNJ16Q9NPI9 418 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 TAS2R16Q9NYV7 291 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 Q9UFV3 132 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 FOXD3Q9UJU5 478 aaPredicted RBP8.93□□□□□ -0.98
CD44-207ENST00000425428 B9D1Q9UPM9 204 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 NBASA2RRP1 2371 aa8.93□□□□□ -0.98
CD44-207ENST00000425428 PCNX1Q96RV3 2341 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 OR6C68A6NDL8 312 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 ZNF99A8MXY4 864 aaPredicted RBP8.92□□□□□ -0.98
CD44-207ENST00000425428 FAM20BO75063 409 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 UPK3AO75631 287 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 TOXO94900 526 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 GLCEO94923 617 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 CLIC3O95833 236 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 LAP3P28838 519 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 GSTT1P30711 240 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 HTR1FP30939 366 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 CAPZA2P47755 286 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 UBE2NP61088 152 aaKnown RBP8.92□□□□□ -0.98
CD44-207ENST00000425428 PCBD1P61457 104 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 FOXF2Q12947 444 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 SGCAQ16586 387 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 CEACAM16Q2WEN9 425 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 C10orf128Q5T292 105 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 VWA1Q6PCB0 445 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 TFAP2EQ6VUC0 442 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 ZNF813Q6ZN06 617 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 SEM1Q6ZVN7 128 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 LUZP2Q86TE4 346 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 RPRMLQ8N4K4 120 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 KISS1RQ969F8 398 aaPredicted RBP8.92□□□□□ -0.98
CD44-207ENST00000425428 STARD4Q96DR4 205 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 WACQ9BTA9 647 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 NELFAQ9H3P2 528 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 GPR35Q9HC97 309 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 CCNB1IP1Q9NPC3 277 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 HINT3Q9NQE9 182 aaKnown RBP8.92□□□□□ -0.98
CD44-207ENST00000425428 SLC7A10Q9NS82 523 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 DNAJC27Q9NZQ0 273 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 MALT1Q9UDY8 824 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 KCNG2Q9UJ96 466 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 ING1Q9UK53 422 aaPredicted RBP8.92□□□□□ -0.98
CD44-207ENST00000425428 LRCH1Q9Y2L9 728 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 LRRC42Q9Y546 428 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 TMEM14AQ9Y6G1 99 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 BSNQ9UPA5 3926 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 FREM1Q5H8C1 2179 aa8.92□□□□□ -0.98
CD44-207ENST00000425428 EFCAB10A6NFE3 127 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 C12orf71A8MTZ7 269 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 KDM4EB2RXH2 506 aaPredicted RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 RPL36A-HNRNPH2H7BZ11 118 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 TNFSF13O75888 250 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 FADS2O95864 444 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 OR8G3PP0DMU2 310 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 AGAP20933 346 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 MSR1P21757 451 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 EEF1B2P24534 225 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 MTNR1AP48039 350 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ASCL1P50553 236 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 ADAM8P78325 824 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 HSF2Q03933 536 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 RUNX1T1Q06455 604 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 GUSBP1Q15486 140 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 HIST3H3Q16695 136 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 SLC36A2Q495M3 483 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 NRN1LQ496H8 165 aa8.91□□□□□ -0.98
CD44-207ENST00000425428 RBM48Q5RL73 367 aaKnown RBP8.91□□□□□ -0.98
CD44-207ENST00000425428 ANKRD16Q6P6B7 361 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms