RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 RIMS4Q9H426 269 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 FAM183AA6NL82 134 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CCSO14618 274 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 PPP1R11O60927 126 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ALDOCP09972 364 aaKnown RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ELAVL4P26378 380 aaKnown RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 TMEM71Q6P5X7 295 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CXCL17Q6UXB2 119 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CCDC190Q86UF4 302 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ARNT2Q9HBZ2 717 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 SLCO3A1Q9UIG8 710 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 SMAD6O43541 496 aaKnown RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 LCATP04180 440 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 AMTP48728 403 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF551Q7Z340 670 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 OR51S1Q8NGJ8 323 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 OR2G2Q8NGZ5 317 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 TREX1Q9NSU2 369 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 B3GAT1Q9P2W7 334 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 MEIS3P1A6NDR6 274 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 XRCC3O43542 346 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CXCL14O95715 111 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 NTF3P20783 257 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 DHODHQ02127 395 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ALKBH1Q13686 389 aaKnown RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 PNLIPRP3Q17RR3 467 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CDONQ4KMG0 1287 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 RPS27LQ71UM5 84 aaKnown RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CPA4Q9UI42 421 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 TMEM265A0A087WTH1 108 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 A0A1W2PPQ1 181 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 DUSP11O75319 330 aaKnown RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 OR10J1P30954 320 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 HLA-BQ31612 363 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 PLCXD3Q63HM9 321 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF836Q6ZNA1 936 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 MIOXQ9UGB7 285 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 FAM74A7A6NL05 159 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ADAMTS4O75173 837 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ENTPD8Q5MY95 495 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 FAHD2BQ6P2I3 314 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 CLECL1Q8IZS7 167 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 OR2AK2Q8NG84 335 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 DYRK2Q92630 601 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 SMIM19Q96E16 107 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 YIPF6Q96EC8 236 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 FAHD2AQ96GK7 314 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 PLK3Q9H4B4 646 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ELOVL3Q9HB03 270 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 SVILO95425 2214 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF354AO60765 605 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-206ENST00000409809 GPR152Q8TDT2 470 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 PADI3Q9ULW8 664 aa11.93□□□□□ -0.5
COL6A3-206ENST00000409809 NCR1O76036 304 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GLSO94925 669 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 HOXA11P31270 313 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 IL2RGP31785 369 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 RACK1P63244 317 aaKnown RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SLC5A12Q1EHB4 618 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 RANBP10Q6VN20 620 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GLDNQ6ZMI3 551 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SYS1Q8N2H4 156 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ARRDC1Q8N5I2 433 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 TIMM29Q9BSF4 260 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GOLGA2P5Q9HBQ8 144 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SLC2A8Q9NY64 477 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 H0Y8G0 127 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 NME2P1O60361 137 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 FBLP22087 321 aaKnown RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 PMS2P11Q13670 270 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 VCX2Q9H322 139 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 IGKV6D-41A0A0C4DH26 115 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 TESK1Q15569 626 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 PIP5KL1Q5T9C9 394 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 Q6ZN92 141 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SCAMP5Q8TAC9 235 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 FAM210BQ96KR6 192 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 PACRGQ96M98 296 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 LRRC3BQ96PB8 259 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 LINC00862A6NCI5 91 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ANTXRLA6NF34 631 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 EPXP11678 715 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GLB1P16278 677 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 RPL7P18124 248 aaKnown RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 PMCHP20382 165 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GSK3AP49840 483 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 DTWD2Q8NBA8 298 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 GPR87Q9BY21 358 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 SHARPINQ9H0F6 387 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 KCNK12Q9HB15 430 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 PCDHGA1Q9Y5H4 931 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 CHD3Q12873 2000 aaKnown RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 DUXBA0A1W2PPF3 345 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 FAM227AF5H4B4 570 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 FCER1GP30273 86 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 OC90Q02509 493 aaPredicted RBP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.92□□□□□ -0.5
COL6A3-206ENST00000409809 BTNL3Q6UXE8 466 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF66Q6ZN08 573 aa11.92□□□□□ -0.5
COL6A3-206ENST00000409809 L3MBTL4Q8NA19 623 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms