RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FUNDC1Q8IVP5 155 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 GID4Q8IVV7 300 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 OR5K2Q8NHB8 316 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DNAJA3Q96EY1 480 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF75AQ96N20 296 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PSD2Q9BQI7 771 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ZYG11BQ9C0D3 744 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DIABLOQ9NR28 239 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 USE1Q9NZ43 259 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 UVRAGQ9P2Y5 699 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 EIF3KQ9UBQ5 218 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 B4GALT7Q9UBV7 327 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CYB5R1Q9UHQ9 305 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RCL1Q9Y2P8 373 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 NUP153P49790 1475 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TCOF1Q13428 1488 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CCDC171Q6TFL3 1326 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 NOTCH4Q99466 2003 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SCAPERQ9BY12 1400 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PLA2R1Q13018 1463 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 A0A1B0GTI1 187 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 GNG14A0A1W2PPG7 69 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FAM231BA6NCW3 169 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 IDSB3KWA1 339 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM114B3SHH9 223 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 GFYI3L273 518 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PRKYO43930 277 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TOM1O60784 492 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RAMP1O60894 148 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RCBTB2O95199 551 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DHFRP00374 187 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FGGP02679 453 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 HOXD4P09016 255 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 HOXB7P09629 217 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 COX5BP10606 129 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF7P17097 686 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 COX5AP20674 150 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CMA1P23946 247 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CALCRP30988 508 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FGF9P31371 208 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PRLHRP49683 370 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DAP3P51398 398 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PRKXP51817 358 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FUT6P51993 359 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CLDN6P56747 220 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CXCR4P61073 352 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ARF6P62330 175 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 GPR17Q13304 367 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM187Q14656 261 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TMED2Q15363 201 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 NDUFA9Q16795 377 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CCDC58Q4VC31 144 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CARD16Q5EG05 197 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PIGGQ5H8A4 983 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FAM120AOSQ5T036 256 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 WDR25Q64LD2 544 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PGAP1Q75T13 922 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ENTHD1Q8IYW4 607 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 BPIFB2Q8N4F0 458 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM156Q8N614 296 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CPNE4Q96A23 557 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RMND5BQ96G75 393 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CENPNQ96H22 339 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DNAJC1Q96KC8 554 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 C2orf48Q96LS8 159 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 OXGR1Q96P68 337 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RSG1Q9BU20 258 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 BEX2Q9BXY8 128 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TRIM15Q9C019 465 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ESM1Q9NQ30 184 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 AGPAT4Q9NRZ5 378 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 WRAP73Q9P2S5 460 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 STOML2Q9UJZ1 356 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RALYQ9UKM9 306 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TBL2Q9Y4P3 447 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 AUP1Q9Y679 476 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SELENOKQ9Y6D0 94 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 NPATQ14207 1427 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 VSTM2BA6NLU5 285 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 C2orf74A8MZ97 194 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 K7EN84 100 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 PLPP1O14494 284 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 BIRC5O15392 142 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 VAMP5O95183 116 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 OXSR1O95747 527 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 SLC2A2P11168 524 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 EDNRAP25101 427 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 LEPP41159 167 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 CAPZBP47756 277 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ARL16Q0P5N6 197 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 C2orf80Q0P641 193 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ST3GAL3Q11203 375 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 BNIP2Q12982 314 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 TPBGQ13641 420 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 GNMTQ14749 295 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 NFATC4Q14934 902 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 C5orf64Q2M2E5 130 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms