RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CROCC2H7BZ55 1655 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF736B4DX44 427 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 EDF1O60869 148 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FCGR2AP12318 317 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ICAM2P13598 275 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 DRD1P21728 446 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 RPS14P62263 151 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SELPLGQ14242 412 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 GAB4Q2WGN9 574 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 H1FNTQ75WM6 255 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PARS2Q7L3T8 475 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 LACC1Q8IV20 430 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 C10orf126Q8N4M7 172 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR10J5Q8NHC4 309 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 DDB2Q92466 427 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PHYHIPQ92561 330 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FAM84AQ96KN4 292 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 CHRDL1Q9BU40 450 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 WDR61Q9GZS3 305 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 S1PR5Q9H228 398 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MMP28Q9H239 520 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR51B5Q9H339 312 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 LIN28AQ9H9Z2 209 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 UGT1A7Q9HAW7 530 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 UGT1A10Q9HAW8 530 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 NPVFQ9HCQ7 196 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MS4A12Q9NXJ0 267 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 KLHL21Q9UJP4 597 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR2W1Q9Y3N9 320 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PHF3Q92576 2039 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 A0A087WZY1 265 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PHF1O43189 567 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TGOLN2O43493 480 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 JRKO75564 520 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 IGHEP01854 428 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 KIR3DL2P43630 455 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 RFX2P48378 723 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 KCNJ3P48549 501 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SUMO3P55854 103 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 RNASEKQ6P5S7 137 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 BRAT1Q6PJG6 821 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZPBP2Q6X784 338 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ETV3LQ6ZN32 361 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FAM219AQ8IW50 185 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR2Z1Q8NG97 314 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PURBQ96QR8 312 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR6C1Q96RD1 312 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PIGMQ9H3S5 423 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 COQ10BQ9H8M1 238 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MBNL1Q9NR56 388 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PIGVQ9NUD9 493 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SMPD3Q9NY59 655 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SIT1Q9Y3P8 196 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 UGT2A1Q9Y4X1 527 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TNFRSF10CO14798 259 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 B4GALT4O60513 344 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SPINK4O60575 86 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 DDAH2O95865 285 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MYF6P23409 242 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 COX7A1P24310 79 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OPRK1P41145 380 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 GNG10P50151 68 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 EBPQ15125 230 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 KCNMB1Q16558 191 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PHLDA2Q53GA4 152 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM236Q5W0B7 351 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 HHIPL2Q6UWX4 724 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 CPEB2Q7Z5Q1 589 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ANKRD13BQ86YJ7 626 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SLC38A6Q8IZM9 456 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MMP21Q8N119 569 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 C1orf52Q8N6N3 182 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR5D13Q8NGL4 314 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ACER1Q8TDN7 264 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ROBO4Q8WZ75 1007 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ALG3Q92685 438 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ISL2Q96A47 359 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 SORBS1Q9BX66 1292 aaKnown RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ACPTQ9BZG2 426 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF586Q9NXT0 402 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 FAM198AQ9UFP1 575 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MYH2Q9UKX2 1941 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 HLA-GP17693 338 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 PMCHP20382 165 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF154Q13106 437 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 NRN1LQ496H8 165 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF628Q5EBL2 1059 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 C6orf201Q7Z4U5 140 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ZFPM1Q8IX07 1006 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 OR10A7Q8NGE5 316 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 LNX1Q8TBB1 728 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MRGPRDQ8TDS7 321 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 ASB17Q8WXJ9 295 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 DCTN5Q9BTE1 182 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 NKX2-4Q9H2Z4 354 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 RANGRFQ9HD47 186 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-202ENST00000375405 CACNG4Q9UBN1 327 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 TBX22Q9Y458 520 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 MMP24Q9Y5R2 645 aa4.3□□□□□ -1.72
SCN1A-202ENST00000375405 KPTNQ9Y664 436 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms