RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PLPP5Q8NEB5 264 aa19.64■□□□□ 0.73
SHMT1-202ENST00000352886 SNAPC3Q92966 411 aa19.64■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF275Q9NSD4 429 aaPredicted RBP19.64■□□□□ 0.73
SHMT1-202ENST00000352886 PEX14O75381 377 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 CTLA4P16410 223 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 RNF4P78317 190 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 COL28A1Q2UY09 1125 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 COX15Q7KZN9 410 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 KMT5CQ86Y97 462 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF431Q8TF32 576 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 TSEN15Q8WW01 171 aaKnown RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF587Q96SQ5 575 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 MESP1Q9BRJ9 268 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 SLC7A5P2Q9GIP4 190 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 RANBP3Q9H6Z4 567 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 SLC22A11Q9NSA0 550 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 MRPL22Q9NWU5 206 aaKnown RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 MGAT4AQ9UM21 535 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 PLPP3O14495 311 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 GPR171O14626 319 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 SSNA1O43805 119 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 ALX3O95076 343 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 AHSA1O95433 338 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 TAS2R20P59543 309 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 PLA2G7Q13093 441 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 MELKQ14680 651 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 SLC17A1Q14916 467 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 ANGPT1Q15389 498 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 YOD1Q5VVQ6 348 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 WDR74Q6RFH5 385 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 FGD2Q7Z6J4 655 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 LUZP2Q86TE4 346 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF227Q86WZ6 799 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 SIX5Q8N196 739 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 MCHR2Q969V1 340 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF768Q9H5H4 540 aaKnown RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 MRPL39Q9NYK5 338 aaKnown RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 VSX1Q9NZR4 365 aaPredicted RBP19.63■□□□□ 0.73
SHMT1-202ENST00000352886 GTF2A1LQ9UNN4 478 aa19.63■□□□□ 0.73
SHMT1-202ENST00000352886 IGLV1-36A0A0B4J1U3 117 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 HPXP02790 462 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 PSMB1P20618 241 aaKnown RBP19.62■□□□□ 0.73
SHMT1-202ENST00000352886 MRPS10P82664 201 aaKnown RBP19.62■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF679Q8IYX0 411 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 STT3BQ8TCJ2 826 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 DNASE2BQ8WZ79 361 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 PIGKQ92643 395 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 STEAP1Q9UHE8 339 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 EXPH5Q8NEV8 1989 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 ANKRD20A5PA0PJZ0 165 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 NAP1L6A6NFF2 107 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 ADAM10O14672 748 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 RAD1O60671 282 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 SULT1A3P0DMM9 295 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 SULT1A4P0DMN0 295 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 CCKBRP32239 447 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 ADAM8P78325 824 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 SMAD2Q15796 467 aaKnown RBP19.62■□□□□ 0.73
SHMT1-202ENST00000352886 SLC18B1Q6NT16 456 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 GLB1L2Q8IW92 636 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 ASB17Q8WXJ9 295 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 OR10A4Q9H209 315 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 SLC22A13Q9Y226 551 aa19.62■□□□□ 0.73
SHMT1-202ENST00000352886 SLC22A23A1A5C7 686 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 C2orf72A6NCS6 295 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 ACOT7O00154 380 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 TSC22D2O75157 780 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 VEGFCP49767 419 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 FAAP20Q6NZ36 180 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 FDX2Q6P4F2 183 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 KDM8Q8N371 416 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 OR11H4Q8NGC9 324 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 STK35Q8TDR2 534 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 THAP3Q8WTV1 239 aaPredicted RBP19.61■□□□□ 0.73
SHMT1-202ENST00000352886 SLC23A1Q9UHI7 598 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 PNPP00491 289 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 IL11P20809 199 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 DCTDP32321 178 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 NPAS1Q99742 590 aa19.61■□□□□ 0.73
SHMT1-202ENST00000352886 MEIKINA0A087WXM9 373 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 ERVH48-1M5A8F1 160 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 HLA-DOBP13765 273 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 MNDAP41218 407 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 BLVRAP53004 296 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 FBXW4P57775 412 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 STARD6P59095 220 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 ELFN2Q5R3F8 820 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 KRT77Q7Z794 578 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 SPEM1Q8N4L4 309 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 RNF128Q8TEB7 428 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 PPP1R14AQ96A00 147 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 SOX1O00570 391 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-202ENST00000352886 OR2T1O43869 369 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 ZNF354AO60765 605 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-202ENST00000352886 LDOC1O95751 146 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-202ENST00000352886 IGHMP01871 453 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 CSRP1P21291 193 aaKnown RBP19.6■□□□□ 0.73
SHMT1-202ENST00000352886 SLC26A5P58743 744 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 TEX30Q5JUR7 227 aa19.6■□□□□ 0.73
SHMT1-202ENST00000352886 OR7E24Q6IFN5 339 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms