RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 IL1AP01583 271 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TFP02787 698 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 CD3GP09693 182 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ABCD3P28288 659 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 CD96P40200 585 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 PPICP45877 212 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 SRP9P49458 86 aaKnown RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 NRG3P56975 720 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 GPR85P60893 370 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TEKQ02763 1124 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 RPL18Q07020 188 aaKnown RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ZSWIM7Q19AV6 140 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ZNF362Q5T0B9 420 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 MZT2AQ6P582 158 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 METAP1DQ6UB28 335 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 QSOX2Q6ZRP7 698 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 CCDC190Q86UF4 302 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 C9orf40Q8IXQ3 194 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 DNAAF1Q8NEP3 725 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 MIXL1Q9H2W2 232 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ENAMQ9NRM1 1142 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 NPIPA1Q9UND3 350 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 COPS3Q9UNS2 423 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ZNF337Q9Y3M9 751 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 A0A075B6Q4 140 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 E9PQ18 207 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 SPI1P17947 270 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 CYB561P49447 251 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 GAS1P54826 345 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 FUT7Q11130 342 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 GALEQ14376 348 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 OR7A5Q15622 319 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 GFOD2Q3B7J2 385 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TMEM91Q6ZNR0 172 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 GDPGP1Q6ZNW5 385 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TOR1AIP2Q8NFQ8 470 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 M1APQ8TC57 530 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 PPP1R14AQ96A00 147 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 SIGLEC12Q96PQ1 595 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 NPAS1Q99742 590 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 C11orf54Q9H0W9 315 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 METTL7AQ9H8H3 244 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 WDR76Q9H967 626 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 SEC61A2Q9H9S3 476 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ADGRL4Q9HBW9 690 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 NUFIP1Q9UHK0 495 aaKnown RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 PAIP2BQ9ULR5 123 aaKnown RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 MMACHCQ9Y4U1 282 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ZNF407Q9C0G0 2248 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 KLF4O43474 513 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TSC22D2O75157 780 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 FREM3P0C091 2139 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ELK1P19419 428 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 QPRTQ15274 297 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ELAVL1Q15717 326 aaKnown RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 ZNF79Q15937 498 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TMEM44Q2T9K0 475 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 LRRN1Q6UXK5 716 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 VASH1Q7L8A9 365 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 FAM220AQ7Z4H9 259 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TMEM178AQ8NBL3 297 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 PHF21AQ96BD5 680 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TAAR6Q96RI8 345 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 LMF2Q9BU23 707 aaKnown RBP7.78□□□□□ -1.16
VPS4B-201ENST00000238497 MMP25Q9NPA2 562 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TBCCD1Q9NVR7 557 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 POLR1DQ9Y2S0 133 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 CLDN16Q9Y5I7 305 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 SPG11Q96JI7 2443 aa7.78□□□□□ -1.16
VPS4B-201ENST00000238497 TCRBV16S1A1N1A0A5B0 115 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 ZNHIT1O43257 154 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 PTP4A3O75365 173 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 OR7A10O76100 309 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 ADH7P40394 386 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 EFNB1P98172 346 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 ZNF85Q03923 595 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 ZNF468Q5VIY5 522 aaPredicted RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 RPL13AP3Q6NVV1 102 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 LRFN4Q6PJG9 635 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 COMMD2Q86X83 199 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 UXS1Q8NBZ7 420 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 TRMT10AQ8TBZ6 339 aaKnown RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 SSC4DQ8WTU2 575 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 MCUBQ9NWR8 336 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 CCDC168Q8NDH2 2452 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 PHF3Q92576 2039 aaKnown RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 TRDV1A0A1B0GX56 115 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 SUSD5O60279 629 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 PPM1BO75688 479 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 ZFAND5O76080 213 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 MPZL1O95297 269 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 CRYABP02511 175 aaKnown RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 IL11P20809 199 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 RPS4Y1P22090 263 aaKnown RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 SIRPAP78324 504 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 KRR1Q13601 381 aaKnown RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 EBPQ15125 230 aaKnown RBP7.77□□□□□ -1.17
VPS4B-201ENST00000238497 LCN1P1Q5VSP4 162 aa7.77□□□□□ -1.17
VPS4B-201ENST00000238497 VASNQ6EMK4 673 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms