RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OXGR1Q96P68 337 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 ZNF587Q96SQ5 575 aaPredicted RBP5.8□□□□□ -1.48
VPS53-213ENST00000572334 ZBTB18Q99592 522 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 PIMREGQ9BSJ6 248 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 TAPBPLQ9BX59 468 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 OSBPL10Q9BXB5 764 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 NDEL1Q9GZM8 345 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 C12orf10Q9HB07 376 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CRLF2Q9HC73 371 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 KCNS2Q9ULS6 477 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 TRIM33Q9UPN9 1127 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 IFT52Q9Y366 437 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 FKBP7Q9Y680 259 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 CMYA5Q8N3K9 4069 aa5.8□□□□□ -1.48
VPS53-213ENST00000572334 hCG_2014768A0A024R1R8 64 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 A0A087WUJ7 227 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 A0A087WXM4 84 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ZNF99A8MXY4 864 aaPredicted RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 AIM2O14862 343 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 UBDO15205 165 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 SLC43A1O75387 559 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 KRT33AO76009 404 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 LYPD3O95274 346 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 AHSA1O95433 338 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 TGFAP01135 160 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 THY1P04216 161 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 T-ENOLP0DO92 83 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ZNF35P13682 527 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 DAOP14920 347 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ETS2P15036 469 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ZNF14P17017 642 aaPredicted RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 ZNF43P17038 809 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 NCF2P19878 526 aaPredicted RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 CBLP22681 906 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 PRKAR1BP31321 381 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 EIF2B2P49770 351 aaKnown RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 FADDQ13158 208 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 CARTPTQ16568 116 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 MOGQ16653 247 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ELFN2Q5R3F8 820 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 C6orf10Q5SRN2 563 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 FAM69AQ5T7M9 428 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 NXNQ6DKJ4 435 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 BLOC1S3Q6QNY0 202 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 UGT2A3Q6UWM9 527 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 WDR88Q6ZMY6 472 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 GPR141Q7Z602 305 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 SATL1Q86VE3 508 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 TSPYL5Q86VY4 417 aaPredicted RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 CARM1Q86X55 608 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 MIER2Q8N344 545 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ZNF786Q8N393 782 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 ADPRHL1Q8NDY3 354 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 NFKBIDQ8NI38 313 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 BBS10Q8TAM1 723 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 FGFBP3Q8TAT2 258 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 CHPT1Q8WUD6 406 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 TRUB1Q8WWH5 349 aaKnown RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 SLC38A4Q969I6 547 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 C7orf26Q96N11 449 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 MOGAT1Q96PD6 335 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 EMC6Q9BV81 110 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 YTHDF1Q9BYJ9 559 aaKnown RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 MRPL37Q9BZE1 423 aaKnown RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 WDR12Q9GZL7 423 aaKnown RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 RACGAP1Q9H0H5 632 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 NPHS2Q9NP85 383 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 MYOZ1Q9NP98 299 aaPredicted RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 MED29Q9NX70 200 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 TAS2R1Q9NYW7 299 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 SELENONQ9NZV5 590 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 VAPAQ9P0L0 249 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 PRPF19Q9UMS4 504 aaKnown RBP5.79□□□□□ -1.48
VPS53-213ENST00000572334 DOCK11Q5JSL3 2073 aa5.79□□□□□ -1.48
VPS53-213ENST00000572334 TRAV36DV7A0A075B6V5 113 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 A0A0B4J2E0 115 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 A0A0G2JND7 137 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 A0A1B0GX12 115 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 FUOMA2VDF0 154 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 SLCO1B7G3V0H7 640 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 WNT9BO14905 357 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 SLC22A2O15244 555 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 OR2T1O43869 369 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 DEAF1O75398 565 aaPredicted RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 GMNNO75496 209 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 HLA-HP01893 362 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 HPXP02790 462 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 NAT1P18440 290 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 NPR2P20594 1047 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 M6PRP20645 277 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 NR4A1P22736 598 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 COL8A2P25067 703 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 ARR3P36575 388 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 GSSP48637 474 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 AQP5P55064 265 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 CDH15P55291 814 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 POU3F1Q03052 451 aaPredicted RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 SNTB2Q13425 540 aaKnown RBP5.78□□□□□ -1.48
VPS53-213ENST00000572334 OR1Q1Q15612 314 aa5.78□□□□□ -1.48
VPS53-213ENST00000572334 NPTX1Q15818 432 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms