RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 IGSF6O95976 241 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 H2BFMP0C1H6 154 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 HMGA1P17096 107 aaKnown RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 PGAM1P18669 254 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 ATF6P18850 670 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 POLR2EP19388 210 aaKnown RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 UGT1A4P22310 534 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 UGT1A3P35503 534 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 HSPA9P38646 679 aaKnown RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 CSNK1A1P48729 337 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 BRWD1-AS2P59051 145 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 HSF1Q00613 529 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 IFFO1Q0D2I5 559 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 ICAM4Q14773 271 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 KCTD19Q17RG1 926 aaPredicted RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 KLHL38Q2WGJ6 581 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 MS4A18Q3C1V0 323 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 DNAL1Q4LDG9 190 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 DCAF10Q5QP82 559 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 RFWD3Q6PCD5 774 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF836Q6ZNA1 936 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 GLCCI1Q86VQ1 547 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 MCOLN2Q8IZK6 566 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 TTC29Q8NA56 475 aaPredicted RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 OR10A7Q8NGE5 316 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 SMAP2Q8WU79 429 aaPredicted RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 TMEM255BQ8WV15 326 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 FCAMRQ8WWV6 532 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 ABTB1Q969K4 478 aaPredicted RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 UBE2E3Q969T4 207 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 PNPLA2Q96AD5 504 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 C9orf72Q96LT7 481 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 PKMYT1Q99640 499 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 CHRNA10Q9GZZ6 450 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 SLITRK2Q9H156 845 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 POMKQ9H5K3 350 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 MRPL40Q9NQ50 206 aaKnown RBP4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 ZC4H2Q9NQZ6 224 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 SPHK2Q9NRA0 654 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 KIF25Q9UIL4 384 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 CPQQ9Y646 472 aa4.49□□□□□ -1.69
VPS35P1-201ENST00000563400 TRIOBPQ9H2D6 2365 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 A0A0A6YYH2 397 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NSG1A0A0A6YYJ2 146 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 A0A0G2JNG1 304 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 EPOPA6NHQ4 379 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 A6NJ64 397 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 BTNL10A8MVZ5 291 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 E7ESA3 106 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 H3BN98 237 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 AQP9O43315 295 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 EMC8O43402 210 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 FZD7O75084 574 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NSA2O95478 260 aaKnown RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 FADS2O95864 444 aaKnown RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 CD160O95971 181 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 OAS1P00973 400 aaKnown RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 IGHG3P01860 377 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 GP1BAP07359 652 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 DCNP07585 359 aaKnown RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 UMODP07911 640 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NGFRP08138 427 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 FGF2P09038 288 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 CD3GP09693 182 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 HLA-DMAP28067 261 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 HMGCLP35914 325 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NUDT1P36639 197 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ACTR1BP42025 376 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NSG1P42857 185 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 GPR1P46091 355 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 HCAR3P49019 387 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 TMED10P49755 219 aaKnown RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 PGFP49763 221 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 CRISP1P54107 249 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 CDKL1Q00532 357 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 GLO1Q04760 184 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 KIR2DS5Q14953 304 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 MLF2Q15773 248 aaPredicted RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 DUSP5Q16690 384 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 FAM153CQ494X1 144 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 SLC22A6Q4U2R8 563 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 XKR6Q5GH73 641 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 FAM78AQ5JUQ0 283 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ZNF585AQ6P3V2 769 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 C4orf22Q6V702 233 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 GGNQ86UU5 652 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ODF3L1Q8IXM7 274 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 DEFB106AQ8N104 65 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 CATSPER1Q8NEC5 780 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 OR6X1Q8NH79 312 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 TMEM239Q8WW34 195 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 BAALCQ8WXS3 180 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 DLX4Q92988 240 aaPredicted RBP4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 NTAN1Q96AB6 310 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 BIRC7Q96CA5 298 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ECSITQ9BQ95 431 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 APOL2Q9BQE5 337 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 ZYG11BQ9C0D3 744 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 KIR3DX1Q9H7L2 352 aa4.48□□□□□ -1.69
VPS35P1-201ENST00000563400 WDR54Q9H977 334 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms