RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RINLQ6ZS11 566 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 VASH1Q7L8A9 365 aaPredicted RBP9.98□□□□□ -0.81
USP3-220ENST00000561381 SLC22A24Q8N4F4 322 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 PAQR4Q8N4S7 273 aaPredicted RBP9.98□□□□□ -0.81
USP3-220ENST00000561381 OR6X1Q8NH79 312 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 ADAMTS16Q8TE57 1224 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 YIPF5Q969M3 257 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 TAMM41Q96BW9 452 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 SH3GL3Q99963 347 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 ZNF385DQ9H6B1 395 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 TMEM38BQ9NVV0 291 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 DUSP13Q9UII6 198 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 LEF1Q9UJU2 399 aaPredicted RBP9.98□□□□□ -0.81
USP3-220ENST00000561381 SLC7A7Q9UM01 511 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 SPEF1Q9Y4P9 236 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 FAM157AC9JC47 383 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 RNF13O43567 381 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 CLPTM1O96005 669 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 C8BP07358 591 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 FAM157BP0CG42 384 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 ITGA2P17301 1181 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 GPR6P46095 362 aaPredicted RBP9.97□□□□□ -0.81
USP3-220ENST00000561381 CRYBA2P53672 197 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 ERVS71-1P61550 626 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 RUNX1T1Q06455 604 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 RBBP4Q09028 425 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 ZP4Q12836 540 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 LIPNQ5VXI9 398 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 TTC33Q6PID6 262 aaPredicted RBP9.97□□□□□ -0.81
USP3-220ENST00000561381 PIWIL3Q7Z3Z3 882 aaKnown RBP9.97□□□□□ -0.81
USP3-220ENST00000561381 SNX32Q86XE0 403 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 DPP10Q8N608 796 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 OR10A6Q8NH74 314 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 CLDND2Q8NHS1 167 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 ZNF566Q969W8 418 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 ATP6V1G3Q96LB4 118 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 TSPAN32Q96QS1 320 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 RACGAP1Q9H0H5 632 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 OR51B6Q9H340 312 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 MS4A5Q9H3V2 200 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 DENND2DQ9H6A0 471 aaPredicted RBP9.97□□□□□ -0.81
USP3-220ENST00000561381 KAT8Q9H7Z6 458 aaKnown RBP9.97□□□□□ -0.81
USP3-220ENST00000561381 EVA1AQ9H8M9 152 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 LPAR2Q9HBW0 351 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 NANSQ9NR45 359 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 ZNF275Q9NSD4 429 aaPredicted RBP9.97□□□□□ -0.81
USP3-220ENST00000561381 NDUFAF1Q9Y375 327 aa9.97□□□□□ -0.81
USP3-220ENST00000561381 A0A1W2PPW3 197 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 TRAPPC13A5PLN9 417 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 DHHO43323 396 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 TCF21O43680 179 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 QDPRP09417 244 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 ASAH2BP0C7U1 165 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 PGA4P0DJD7 388 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 PGA3P0DJD8 388 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 OR8G3PP0DMU2 310 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 SAGP10523 405 aaPredicted RBP9.96□□□□□ -0.82
USP3-220ENST00000561381 PCGF2P35227 344 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 MAGEB1P43366 347 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 DVL1P1P54792 670 aaPredicted RBP9.96□□□□□ -0.82
USP3-220ENST00000561381 RPS23P62266 143 aaKnown RBP9.96□□□□□ -0.82
USP3-220ENST00000561381 MYBPC1Q00872 1141 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 NFYCQ13952 458 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 RGS7BPQ6MZT1 257 aaPredicted RBP9.96□□□□□ -0.82
USP3-220ENST00000561381 RFLNBQ8N5W9 214 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 SLC30A7Q8NEW0 376 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 OR4K5Q8NGD3 323 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 DYDC1Q8WWB3 177 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 RDH5Q92781 318 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 SLC25A44Q96H78 314 aaPredicted RBP9.96□□□□□ -0.82
USP3-220ENST00000561381 ZNF347Q96SE7 839 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 PRSS27Q9BQR3 290 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 ZNF426Q9BUY5 554 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 RABEP2Q9H5N1 569 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 MEPEQ9NQ76 525 aaPredicted RBP9.96□□□□□ -0.82
USP3-220ENST00000561381 TREM2Q9NZC2 230 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 SLC7A8Q9UHI5 535 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 ZNF229Q9UJW7 825 aa9.96□□□□□ -0.82
USP3-220ENST00000561381 B4DSR2 109 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 BLOC1S5-TXNDC5H3BN57 136 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 ANGPT2O15123 496 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 PPIHO43447 177 aaKnown RBP9.95□□□□□ -0.82
USP3-220ENST00000561381 SHOX2O60902 331 aaPredicted RBP9.95□□□□□ -0.82
USP3-220ENST00000561381 RP2O75695 350 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 BCL10O95999 233 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 HIST1H2ABP04908 130 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 F13BP05160 661 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 UMPSP11172 480 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 TNFRSF1BP20333 461 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 ACHEP22303 614 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 GZMMP51124 257 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 HIST3H2AQ7L7L0 130 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 PATL1Q86TB9 770 aaKnown RBP9.95□□□□□ -0.82
USP3-220ENST00000561381 LINC00528Q8N1L1 170 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 PFN4Q8NHR9 129 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 GTF3AQ92664 365 aaKnown RBP9.95□□□□□ -0.82
USP3-220ENST00000561381 HIST1H2ACQ93077 130 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 MCHR2Q969V1 340 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 PCDHAC1Q9H158 963 aa9.95□□□□□ -0.82
USP3-220ENST00000561381 METTL17Q9H7H0 456 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms