RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 OR10Z1Q8NGY1 313 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 FAM3DQ96BQ1 224 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 MRPS24Q96EL2 167 aaKnown RBP14.77□□□□□ -0.04
SHMT2-231ENST00000557433 WDR89Q96FK6 387 aaPredicted RBP14.77□□□□□ -0.04
SHMT2-231ENST00000557433 SIPA1Q96FS4 1042 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 INTS14Q96SY0 518 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 SLC38A3Q99624 504 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 SFXN1Q9H9B4 322 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 MMP25Q9NPA2 562 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 RASL12Q9NYN1 266 aa14.77□□□□□ -0.04
SHMT2-231ENST00000557433 GPN3Q9UHW5 284 aaPredicted RBP14.77□□□□□ -0.04
SHMT2-231ENST00000557433 POM121BA6NF01 834 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 POM121CA8CG34 1229 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 ABCD4O14678 606 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 NDUFA2O43678 99 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 SLC25A4P12235 298 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 RNH1P13489 461 aaKnown RBP14.76□□□□□ -0.05
SHMT2-231ENST00000557433 SORDQ00796 357 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 DCAF12L2Q5VW00 463 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 TMEM205Q6UW68 189 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 LSRQ86X29 649 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-231ENST00000557433 GABRG1Q8N1C3 465 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 BCORP1Q8N888 145 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 OR51D1Q8NGF3 324 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 ST8SIA2Q92186 375 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 OR10H1Q9Y4A9 318 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 HRH3Q9Y5N1 445 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 DOCK9Q9BZ29 2069 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 BRCA2P51587 3418 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 TMEM272A0A1B0GTI8 110 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 TMEM82A0PJX8 343 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 TMEM200CA6NKL6 621 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 FAM171A2A8MVW0 826 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 RDH16O75452 317 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 CAPZA1P52907 286 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 FAM166AQ6J272 317 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 UQCC3Q6UW78 93 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 TAF8Q7Z7C8 310 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 OOSP2Q86WS3 158 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 KCNRGQ8N5I3 272 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 C10orf53Q8N6V4 93 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 OR6N2Q8NGY6 317 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 PRODH2Q9UF12 536 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 EPHA6Q9UF33 1036 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 GPR160Q9UJ42 338 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 FBXL2Q9UKC9 423 aa14.76□□□□□ -0.05
SHMT2-231ENST00000557433 LINC01553A4QN01 128 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 CHURC1-FNTBB4DL54 471 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 LGALS8O00214 317 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 RASGRP1O95267 797 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 CD3DP04234 171 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 PROS1P07225 676 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 OR4E1P0C645 316 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 CT45A8P0DMV1 189 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 CT45A9P0DMV2 189 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 KIR2DL1P43626 348 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-231ENST00000557433 GPR3P46089 330 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 LSSP48449 732 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 DMWDQ09019 674 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 ZNF169Q14929 603 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-231ENST00000557433 C2orf76Q3KRA6 126 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 GXYLT1Q4G148 440 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 CT45A2Q5DJT8 189 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 GLT8D1Q68CQ7 371 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 LIN54Q6MZP7 749 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 MOB3CQ70IA8 216 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 RD3Q7Z3Z2 195 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 ZNF546Q86UE3 836 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 PHOSPHO2Q8TCD6 241 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 TSEN15Q8WW01 171 aaKnown RBP14.75□□□□□ -0.05
SHMT2-231ENST00000557433 HERVK_113Q902F9 699 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 SPACA7Q96KW9 195 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 DGAT2Q96PD7 388 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 ZNF416Q9BWM5 594 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 GPR174Q9BXC1 333 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 SRA1Q9HD15 236 aaKnown RBP14.75□□□□□ -0.05
SHMT2-231ENST00000557433 WSB2Q9NYS7 404 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-231ENST00000557433 LRIT1Q9P2V4 623 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 PLCL2Q9UPR0 1127 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 TICRRQ7Z2Z1 1910 aa14.75□□□□□ -0.05
SHMT2-231ENST00000557433 TRBV23OR9-2A0A075B6M9 112 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 A0A1B0GTI1 187 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 KANTRA0A1W2PQU2 76 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 OR5K4A6NMS3 321 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 CLDN4O14493 209 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 EIF4E2O60573 245 aaKnown RBP14.74□□□□□ -0.05
SHMT2-231ENST00000557433 RAB3DO95716 219 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 CD37P11049 281 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 GALNSP34059 522 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 OC90Q02509 493 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-231ENST00000557433 FUT7Q11130 342 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 ZMYND11Q15326 602 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 FNDC7Q5VTL7 733 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-231ENST00000557433 PM20D2Q8IYS1 436 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 BEST3Q8N1M1 668 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 PRSS35Q8N3Z0 413 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 CLRN3Q8NCR9 226 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 OR4D10Q8NGI6 311 aa14.74□□□□□ -0.05
SHMT2-231ENST00000557433 OR4C3Q8NH37 302 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms