RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SLC9A3P48764 834 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 EVX1P49640 407 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 PRKCDQ05655 676 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 MELKQ14680 651 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 FAM205BPQ63HN1 556 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 CLEC2AQ6UVW9 174 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 PIGWQ7Z7B1 504 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 FNDC8Q8TC99 324 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 ACOT11Q8WXI4 607 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 HSH2DQ96JZ2 352 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 RHNO1Q9BSD3 238 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 FNDC11Q9BVV2 318 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 TXNIPQ9H3M7 391 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 MYOZ1Q9NP98 299 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 SNX13Q9Y5W8 968 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 ENPP4Q9Y6X5 453 aa13.89□□□□□ -0.19
CCDC88C-209ENST00000554872 A0A1W2PRQ8 180 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 MCIDASD6RGH6 385 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 SSX4O60224 188 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 RAB36O95755 333 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF682O95780 498 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 F13BP05160 661 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 QDPRP09417 244 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 HSD17B1P14061 328 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 ACADSP16219 412 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 NR4A1P22736 598 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 CAPZA2P47755 286 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 CLRN1P58418 232 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 RAB1AP62820 205 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 RUNX1T1Q06455 604 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 NPRL3Q12980 569 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 FHL1Q13642 323 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 DGCR6Q14129 220 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 SPATS1Q496A3 300 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 MBOAT2Q6ZWT7 520 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 SKA3Q8IX90 412 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 MCHR2Q969V1 340 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 FBXO17Q96EF6 278 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 KCNK17Q96T54 332 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 ALG12Q9BV10 488 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 C1orf198Q9H425 327 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 GORASP2Q9H8Y8 452 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 ARL2BPQ9Y2Y0 163 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 FKBP7Q9Y680 259 aa13.88□□□□□ -0.19
CCDC88C-209ENST00000554872 CR1P17927 2039 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 IGHV4-30-2A0A087WSY4 118 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 A0A087WUU8 490 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 NDUFS8O00217 210 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 PIP5K1CO60331 668 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 TRMUO75648 421 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 FARS2O95363 451 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 SERPINA5P05154 406 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 CD79AP11912 226 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 IFI30P13284 250 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 NPR2P20594 1047 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF84P51523 738 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 MRPS34P82930 218 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 LOXL1Q08397 574 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 DAG1Q14118 895 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 ALG10Q5BKT4 473 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 TMPRSS11FQ6ZWK6 438 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 FKBP9P1Q75LS8 142 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 TSEN54Q7Z6J9 526 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 CYP4Z1Q86W10 505 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF584Q8IVC4 421 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 NRMQ8IXM6 262 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 PGAM4Q8N0Y7 254 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 ANKS4BQ8N8V4 417 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 LRRC75AQ8NAA5 344 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 MOSPD2Q8NHP6 518 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 C10orf105Q8TEF2 133 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 FAM162AQ96A26 154 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 DOK1Q99704 481 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 FAM107BQ9H098 131 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 NMNAT1Q9HAN9 279 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 DCAF13Q9NV06 445 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 SAMD4AQ9UPU9 718 aaKnown RBP13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 SPEF1Q9Y4P9 236 aa13.87□□□□□ -0.19
CCDC88C-209ENST00000554872 J3KTA2 159 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 DCTN3O75935 186 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 SNAP29O95721 258 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 MAKP20794 623 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 FUT4P22083 530 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 THBS4P35443 961 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 GLRXP35754 106 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 GIPRP48546 466 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 PTDSS1P48651 473 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 RPS23P62266 143 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 GNGT1P63211 74 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 LSM11P83369 360 aaKnown RBP eCLIP13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 SNTB2Q13425 540 aaKnown RBP13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 SLC36A2Q495M3 483 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF525Q8N782 197 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 ZNF519Q8TB69 540 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 FAM168AQ92567 244 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 MS4A3Q96HJ5 214 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 C7orf34Q96L11 122 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 DHRS1Q96LJ7 313 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 SORCS2Q96PQ0 1159 aa13.86□□□□□ -0.19
CCDC88C-209ENST00000554872 LRRC37BQ96QE4 947 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms