RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 C1orf198Q9H425 327 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 GRHPRQ9UBQ7 328 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 CREBBPQ92793 2442 aa12.56□□□□□ -0.4
CCDC88C-207ENST00000554051 A0A096LPE4 126 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 A0A1W2PPZ6 126 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 A0A1W2PR80 420 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 UNC119BA6NIH7 251 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 SHISA9B4DS77 424 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 CDC42EP2O14613 210 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 ACOT8O14734 319 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 ARHGEF9O43307 516 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 OR10H3O60404 316 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 DIRAS1O95057 198 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 RAB36O95755 333 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 QDPRP09417 244 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 OR8G3PP0DMU2 310 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 BMP4P12644 408 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 RPS6KA3P51812 740 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 CD47Q08722 323 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 SLC36A2Q495M3 483 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 PHYHD1Q5SRE7 291 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 THEM4Q5T1C6 240 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 TBPL2Q6SJ96 375 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 ARIH2OSQ8N7S6 290 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 LRRC75AQ8NAA5 344 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 OR52J3Q8NH60 311 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 FANK1Q8TC84 345 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 SLC7A6OSQ96CW6 309 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 KCNK17Q96T54 332 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 REEP1Q9H902 201 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 TMEM38BQ9NVV0 291 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 CISD1Q9NZ45 108 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 FBXO9Q9UK97 447 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 SIGLEC7Q9Y286 467 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 LYVE1Q9Y5Y7 322 aa12.55□□□□□ -0.4
CCDC88C-207ENST00000554051 MYO9AB2RTY4 2548 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 POLQO75417 2590 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 DHRS12A0PJE2 317 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 TNFRSF11BO00300 401 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 PAX1P15863 534 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 SDHAP31040 664 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 SLC6A6P31641 620 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 ACVR1BP36896 505 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 GUCA1AP43080 201 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 HMGA2P52926 109 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 MRPS34P82930 218 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 LAPTM4AQ15012 233 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 SEC23BQ15437 767 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 TESK1Q15569 626 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 AGAP6Q5VW22 663 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 SHEQ5VZ18 495 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 OR2T5Q6IEZ7 315 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 PGM2L1Q6PCE3 622 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 SMARCD3Q6STE5 483 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 DPY19L2P2Q6ZN68 376 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 OR4F15Q8NGB8 312 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 OR2T29Q8NH02 315 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF519Q8TB69 540 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 MCHR2Q969V1 340 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF570Q96NI8 536 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 TSPAN32Q96QS1 320 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 TNFRSF13CQ96RJ3 184 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 DHRS9Q9BPW9 319 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 WACQ9BTA9 647 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 GSX2Q9BZM3 304 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 KCNN2Q9H2S1 579 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 LIME1Q9H400 295 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 ITGB1BP2Q9UKP3 347 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 SPG11Q96JI7 2443 aa12.54□□□□□ -0.4
CCDC88C-207ENST00000554051 IGHV1-18A0A0C4DH31 117 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 ARRDC5A6NEK1 342 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 VSTM5A8MXK1 200 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 CCNB2O95067 398 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 PLAUP00749 431 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 PTHP01270 115 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 CECR9P0C854 216 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 GSTM3P21266 225 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 LSM11P83369 360 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 MS4A2Q01362 244 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 NAAAQ02083 359 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 TSPAN31Q12999 210 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 KRR1Q13601 381 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 FHL1Q13642 323 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 ETFDHQ16134 617 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 C1orf94Q6P1W5 598 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 TMEM53Q6P2H8 277 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 LRFN4Q6PJG9 635 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 DNM1P34Q6PK57 102 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 DTX2Q86UW9 622 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 FBXL14Q8N1E6 418 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 SLC22A24Q8N4F4 322 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 OR52L1Q8NGH7 329 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 GNPDA2Q8TDQ7 276 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 SMAP2Q8WU79 429 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 ZNF837Q96EG3 531 aaPredicted RBP12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 TRMT61AQ96FX7 289 aaKnown RBP12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 CLPTM1LQ96KA5 538 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 LRMDAQ9H2I8 198 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 NRIP3Q9NQ35 241 aa12.53□□□□□ -0.4
CCDC88C-207ENST00000554051 SAMHD1Q9Y3Z3 626 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms