RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 RAB39BQ96DA2 213 aa6.18□□□□□ -1.42
ATXN3-219ENST00000553488 SLC35A5Q9BS91 424 aa6.18□□□□□ -1.42
ATXN3-219ENST00000553488 ZMAT3Q9HA38 289 aaKnown RBP6.18□□□□□ -1.42
ATXN3-219ENST00000553488 NTN4Q9HB63 628 aa6.18□□□□□ -1.42
ATXN3-219ENST00000553488 DDX28Q9NUL7 540 aaKnown RBP6.18□□□□□ -1.42
ATXN3-219ENST00000553488 MARCOQ9UEW3 520 aaPredicted RBP6.18□□□□□ -1.42
ATXN3-219ENST00000553488 ZDHHC2Q9UIJ5 367 aa6.18□□□□□ -1.42
ATXN3-219ENST00000553488 CHST2Q9Y4C5 530 aa6.18□□□□□ -1.42
ATXN3-219ENST00000553488 PRSS51A0A1B0GVH4 220 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 A0A1W2PPW3 197 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 C17orf100A8MU93 164 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 AHSA1O95433 338 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CPSF4O95639 269 aaKnown RBP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CLPTM1O96005 669 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 NUDT17P0C025 328 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 ANPEPP15144 967 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 B4GALT1P15291 398 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 IL7RP16871 459 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 FAHP16930 419 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF43P17038 809 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 GATA3P23771 443 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 ZFP36P26651 326 aaKnown RBP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CRYBB2P43320 205 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CAPZA2P47755 286 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 MAD2L1Q13257 205 aaPredicted RBP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CHI3L2Q15782 390 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 SMU1Q2TAY7 513 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 ALKBH6Q3KRA9 238 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 MMEL1Q495T6 779 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 SPANXN4Q5MJ08 99 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 RNF220Q5VTB9 566 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 C6orf89Q6UWU4 347 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 NHLRC1Q6VVB1 395 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 VRK2Q86Y07 508 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 C20orf196Q8IYI0 205 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 GPR137CQ8N3F9 429 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CADM2Q8N3J6 435 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 PIK3C3Q8NEB9 887 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 DEFB108BQ8NET1 73 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 TAF15Q92804 592 aaKnown RBP eCLIP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 KTI12Q96EK9 354 aaPredicted RBP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 APOPT1Q96IL0 206 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF48Q96MX3 618 aaPredicted RBP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CCDC115Q96NT0 180 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 OXGR1Q96P68 337 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 DUX5Q96PT3 197 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 TSPAN32Q96QS1 320 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 SLITRK2Q9H156 845 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 SLC17A7Q9P2U7 560 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 SLC7A8Q9UHI5 535 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 PRDM4Q9UKN5 801 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF346Q9UL40 294 aaKnown RBP6.17□□□□□ -1.42
ATXN3-219ENST00000553488 WIPI2Q9Y4P8 454 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 CACNG2Q9Y698 323 aa6.17□□□□□ -1.42
ATXN3-219ENST00000553488 IGKV1D-42A0A075B6H8 117 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PPIAL4EA0A075B759 164 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PPIAL4CA0A0B4J2A2 164 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 LOC102725191A0A1B0GVB3 256 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 C9orf118A6NHY6 69 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PPIAL4DF5H284 164 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 M0R3G1 203 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF500O60304 480 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 CDC14BO60729 498 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 HPRP00739 348 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PPIAL4FP0DN26 164 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 CD79AP11912 226 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 HLA-DOBP13765 273 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF250P15622 560 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 CHI3L1P36222 383 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 SERPINB5P36952 375 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 CDKN2CP42773 168 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 RPS5P46782 204 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PTDSS1P48651 473 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 MVDP53602 400 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 KRTAP10-2P60368 255 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 IL13RA1P78552 427 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 CCL8P80075 99 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 TXNL4AP83876 142 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PIGFQ07326 219 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 GNA13Q14344 377 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 MFSD13AQ14CX5 517 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 TRMT5Q32P41 509 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 LIN52Q52LA3 116 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 KLF17Q5JT82 389 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 GKAP1Q5VSY0 366 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ANXA8L1Q5VT79 327 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ZNF813Q6ZN06 617 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 SERPINA11Q86U17 422 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 GSPT2Q8IYD1 628 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 CLIP4Q8N3C7 705 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 PAQR4Q8N4S7 273 aaPredicted RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 DTX3Q8N9I9 347 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 SYT14Q8NB59 555 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ADPRHL1Q8NDY3 354 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 FGFBP3Q8TAT2 258 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 GTF3AQ92664 365 aaKnown RBP6.16□□□□□ -1.42
ATXN3-219ENST00000553488 SLC25A36Q96CQ1 311 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 ZIM3Q96PE6 472 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 KCNJ15Q99712 375 aa6.16□□□□□ -1.42
ATXN3-219ENST00000553488 DENND2DQ9H6A0 471 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms