RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 IGFL3Q6UXB1 125 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 DPY19L2P2Q6ZN68 376 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 Q6ZPB1 254 aaPredicted RBP7.56□□□□□ -1.2
VPS29-203ENST00000546588 MDGA2Q7Z553 956 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 OAFQ86UD1 273 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 OR8H3Q8N146 312 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 ZNF248Q8NDW4 579 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 OR52L1Q8NGH7 329 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 OR5AN1Q8NGI8 311 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 OR13C2Q8NGS9 318 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 OR4Q3Q8NH05 313 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 MFSD8Q8NHS3 518 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 ZNF563Q8TA94 476 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 TMEM163Q8TC26 289 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 KTI12Q96EK9 354 aaPredicted RBP7.56□□□□□ -1.2
VPS29-203ENST00000546588 SH3YL1Q96HL8 342 aaPredicted RBP7.56□□□□□ -1.2
VPS29-203ENST00000546588 Q96MT0 163 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 BCL7BQ9BQE9 202 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 ING2Q9H160 280 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 ZNF552Q9H707 407 aaPredicted RBP7.56□□□□□ -1.2
VPS29-203ENST00000546588 TBC1D23Q9NUY8 699 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 MRPL39Q9NYK5 338 aaKnown RBP7.56□□□□□ -1.2
VPS29-203ENST00000546588 NDUFA13Q9P0J0 144 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 ABI3Q9P2A4 366 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 PSORS1C1Q9UIG5 152 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 FBXL2Q9UKC9 423 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 KLK13Q9UKR3 277 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 PLA2G2DQ9UNK4 145 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 SLC6A5Q9Y345 797 aa7.56□□□□□ -1.2
VPS29-203ENST00000546588 RIF1Q5UIP0 2472 aaKnown RBP7.56□□□□□ -1.2
VPS29-203ENST00000546588 ASPMQ8IZT6 3477 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 LOC102725191A0A1B0GVB3 256 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 OR5H15A6NDH6 313 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CLCA1A8K7I4 914 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 H3BN98 237 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 DNPH1O43598 174 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 EFNA2O43921 213 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 PRKYO43930 277 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 NME2P1O60361 137 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ZIC3O60481 467 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 SMPD2O60906 423 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 GLSO94925 669 aaPredicted RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 HPNP05981 417 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 IGFBP1P08833 259 aaPredicted RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 PEPDP12955 493 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 BMP7P18075 431 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CNR1P21554 472 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 PCMT1P22061 227 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 SLC2A5P22732 501 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CXCR1P25024 350 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 SLC6A6P31641 620 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CASRP41180 1078 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 P2RY4P51582 365 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CCR4P51679 360 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 AGFG1P52594 562 aaKnown RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 NR1H2P55055 460 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 B3GALT5-AS1P59052 145 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 IL13RA1P78552 427 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 IL5RAQ01344 420 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 GGTLC2Q14390 218 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 IRF3Q14653 427 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 TBCEQ15813 527 aaPredicted RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 SYT14P1Q58G82 188 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ABHD17BQ5VST6 288 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 C1orf140Q5VVS0 124 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 FAM205BPQ63HN1 556 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 FAM180AQ6UWF9 173 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ISLR2Q6UXK2 745 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CASP12Q6UXS9 341 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 NHLRC1Q6VVB1 395 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 PRSS48Q7RTY5 328 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ADCK1Q86TW2 530 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ZNF786Q8N393 782 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 SIRT6Q8N6T7 355 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ZFP62Q8NB50 900 aaPredicted RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 TSPAN14Q8NG11 270 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 OR1J4Q8NGS1 313 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 MOSPD2Q8NHP6 518 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CNIH3Q8TBE1 160 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 DDIT4LQ96D03 193 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 SLC38A2Q96QD8 506 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 NPAS1Q99742 590 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 FAM173AQ9BQD7 235 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 CDCA4Q9BXL8 241 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 NMNAT2Q9BZQ4 307 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 ZNF703Q9H7S9 590 aaPredicted RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 VCX3AQ9NNX9 186 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 C12orf4Q9NQ89 552 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 NANSQ9NR45 359 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 DEPPQ9NTK1 212 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 HAO2Q9NYQ3 351 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 STMN3Q9NZ72 180 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 MED11Q9P086 117 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 LRFN1Q9P244 771 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 TRAPPC4Q9Y296 219 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 TPRKBQ9Y3C4 175 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 HDGFL3Q9Y3E1 203 aa7.55□□□□□ -1.2
VPS29-203ENST00000546588 SPIN1Q9Y657 262 aaPredicted RBP7.55□□□□□ -1.2
VPS29-203ENST00000546588 CFAP47Q6ZTR5 3102 aa7.54□□□□□ -1.2
VPS29-203ENST00000546588 LOC400499M0QZD8 3231 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms