RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 CLEC4FQ8N1N0 589 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 C11orf44Q8N8P7 122 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 ZSCAN4Q8NAM6 433 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 OR7A2PQ8NGA2 310 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 OR56A1Q8NGH5 318 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 FGFBP3Q8TAT2 258 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 NEURL3Q96EH8 262 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 MARS2Q96GW9 593 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 TOR3AQ9H497 397 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 TCF7L2Q9NQB0 619 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 SLCO1C1Q9NYB5 712 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 OR5V1Q9UGF6 321 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 SLC7A8Q9UHI5 535 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 RCE1Q9Y256 329 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 SLC35A3Q9Y2D2 325 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 NPTNQ9Y639 398 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 DOCK11Q5JSL3 2073 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 A8MXK9 166 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 SDHDO14521 159 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 VAMP5O95183 116 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 IGHV4-59P01825 116 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 KRT16P08779 473 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 LAMP1P11279 417 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 IDO1P14902 403 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 PRPS1L1P21108 318 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 HPCAL1P37235 193 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 ZNF81P51508 661 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 DPY19L1Q2PZI1 675 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 TMEM255AQ5JRV8 349 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 METTL21CQ5VZV1 264 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 NXNQ6DKJ4 435 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 GEMIN6Q8WXD5 167 aaKnown RBP12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 C3orf30Q96M34 536 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 ZNF350Q9GZX5 532 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 ATAD3AQ9NVI7 634 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 POMT1Q9Y6A1 747 aa12.88□□□□□ -0.35
CLSTN3-216ENST00000545663 NUP214P35658 2090 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 ZNF816-ZNF321PA0A0X1KG74 233 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 GMNCA6NCL1 334 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 GPR37O15354 613 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 C6orf47O95873 294 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 LCKP06239 509 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 THRBP10828 461 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 B4GALT1P15291 398 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 FUT4P22083 530 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 EPHA3P29320 983 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 LSP1P33241 339 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 CLNS1AP54105 237 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 STX1BP61266 288 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 ARHGAP11BQ3KRB8 267 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 IL23RQ5VWK5 629 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 CARD17Q5XLA6 110 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 TYW3Q6IPR3 259 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 ZNF813Q6ZN06 617 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 KLHL36Q8N4N3 616 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 ICA1LQ8NDH6 482 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 OR2M2Q96R28 347 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 TAPBPLQ9BX59 468 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 RABEP2Q9H5N1 569 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 C16orf95Q9H693 158 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 FGFR1OP2Q9NVK5 253 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 KLHL14Q9P2G3 628 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 RASD1Q9Y272 281 aa12.87□□□□□ -0.35
CLSTN3-216ENST00000545663 SLC22A23A1A5C7 686 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 F5H0A9 414 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 UBDO15205 165 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 RAB36O95755 333 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 IDH3AP50213 366 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 CLDN8P56748 225 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 RPL15P61313 204 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 KCNJ10P78508 379 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 SLC3A1Q07837 685 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 LRRC74AQ0VAA2 488 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 ZMYND11Q15326 602 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 LRRN1Q6UXK5 716 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 CPLX4Q7Z7G2 160 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 TMEM123Q8N131 208 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 PSMA8Q8TAA3 256 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 ZNF519Q8TB69 540 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 SSMEM1Q8WWF3 244 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 C11orf40Q8WZ69 217 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 OR5P2Q8WZ92 322 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 FAM71F1Q96KD3 344 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 PPP1R36Q96LQ0 422 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 ZBTB18Q99592 522 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 LYSTQ99698 3801 aa12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 EXOSC3Q9NQT5 275 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-216ENST00000545663 A0A0G2JND7 137 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 MATN1P21941 496 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 CXCR1P25024 350 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 MRPL19P49406 292 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 PCBP3P57721 371 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 GNGT1P63211 74 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 RBBP4Q09028 425 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 ESCO2Q56NI9 601 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 C6orf89Q6UWU4 347 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 BTNL3Q6UXE8 466 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 LRRC28Q86X40 367 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 RNF130Q86XS8 419 aa12.85□□□□□ -0.35
CLSTN3-216ENST00000545663 LYG1Q8N1E2 194 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms