RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TMEM41BQ5BJD5 291 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 TFDP3Q5H9I0 405 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 C1orf185Q5T7R7 199 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 SULT1C3Q6IMI6 304 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 SLC25A25Q6KCM7 469 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 NDUFAF7Q7L592 441 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 SETD3Q86TU7 594 aaPredicted RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 POM121L12Q8N7R1 296 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ZNRF1Q8ND25 227 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ICA1LQ8NDH6 482 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 C17orf47Q8NEP4 570 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 SPPL2AQ8TCT8 520 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 MIPOL1Q8TD10 442 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 NABP1Q96AH0 204 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 TCEANC2Q96MN5 208 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 RCHY1Q96PM5 261 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 UTP23Q9BRU9 249 aaKnown RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 FICDQ9BVA6 458 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ZNF416Q9BWM5 594 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 MRPL13Q9BYD1 178 aaKnown RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 CENPMQ9NSP4 180 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 ZNF226Q9NYT6 803 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 DHCR7Q9UBM7 475 aaKnown RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 NXT1Q9UKK6 140 aaKnown RBP2.98□□□□□ -1.93
CD44-235ENST00000532339 PLXNB1O43157 2135 aa2.98□□□□□ -1.93
CD44-235ENST00000532339 AGRNO00468 2067 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ANKRD12Q6UB98 2062 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 CPAMD8Q8IZJ3 1885 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 IGLV3-10A0A075B6K4 115 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 A0A0D9SEW6 157 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 A0A1W2PQ72 361 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 SLC5A10A0PJK1 596 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 TSPAN11A1L157 253 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ZNF233A6NK53 670 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ARHGEF33A8MVX0 844 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 G3V4G9 280 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 CDC7O00311 574 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 BCL2L11O43521 198 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ZMPSTE24O75844 475 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ADCY5O95622 1261 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 KRT8P05787 483 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ADORA3P0DMS8 318 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 CALCBP10092 127 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 SPTBP11277 2137 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 COX6A1P12074 109 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ICAM2P13598 275 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 PAICSP22234 425 aaKnown RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 USF1P22415 310 aaPredicted RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 SLC1A6P48664 564 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 DAOAP59103 153 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 FKBP3Q00688 224 aaKnown RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 RAD51Q06609 339 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ZNF146Q15072 292 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 SLC5A12Q1EHB4 618 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 TCHHL1Q5QJ38 904 aaPredicted RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 ACER2Q5QJU3 275 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 CLEC2AQ6UVW9 174 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 SCARA5Q6ZMJ2 495 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ABHD13Q7L211 337 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 NUFIP2Q7Z417 695 aaKnown RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 RANBP3LQ86VV4 465 aaPredicted RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 GPBP1Q86WP2 473 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 GRAMD2AQ8IUY3 354 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 GCNT2Q8N0V5 402 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 PYROXD2Q8N2H3 581 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 GPD1LQ8N335 351 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 METTL4Q8N3J2 472 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ATP6V0D2Q8N8Y2 350 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 FADS6Q8N9I5 356 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 FBXO25Q8TCJ0 367 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 NTNG2Q96CW9 530 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 NUS1Q96E22 293 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 ZNF414Q96IQ9 312 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 COL21A1Q96P44 957 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 CPXM1Q96SM3 734 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 NPAS2Q99743 824 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 GPA33Q99795 319 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 RBM24Q9BX46 236 aaKnown RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 CARD6Q9BX69 1037 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 NT5DC2Q9H857 520 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 Q9HAA7 133 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 SLC40A1Q9NP59 571 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 NRN1Q9NPD7 142 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 DEPPQ9NTK1 212 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 THYN1Q9P016 225 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 PDP1Q9P0J1 537 aaPredicted RBP2.97□□□□□ -1.93
CD44-235ENST00000532339 LAMP5Q9UJQ1 280 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 B9D1Q9UPM9 204 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 STARD9Q9P2P6 4700 aa2.97□□□□□ -1.93
CD44-235ENST00000532339 CCT8L1PA6NM43 557 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 H3BMH7 237 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 XPO1O14980 1071 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 ZNF354AO60765 605 aaPredicted RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 OR4F21O95013 312 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 CD160O95971 181 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 GOT2P00505 430 aaKnown RBP2.96□□□□□ -1.94
CD44-235ENST00000532339 IGHG1P01857 330 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 IGHDP01880 384 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 OR9G9P0C7N8 305 aa2.96□□□□□ -1.94
CD44-235ENST00000532339 KRT13P13646 458 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms