RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MCHR2Q969V1 340 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 NRBF2Q96F24 287 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 TSPAN32Q96QS1 320 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 CLEC4MQ9H2X3 399 aaPredicted RBP12.51□□□□□ -0.41
NUP54-216ENST00000514901 ESRP2Q9H6T0 727 aaKnown RBP12.51□□□□□ -0.41
NUP54-216ENST00000514901 SMURF2Q9HAU4 748 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 NRIP3Q9NQ35 241 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 VNN3Q9NY84 501 aa12.51□□□□□ -0.41
NUP54-216ENST00000514901 ARPC4-TTLL3A0A0A6YYG9 625 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 DHHO43323 396 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 IDH3BO43837 385 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 ZNF26P17031 533 aaPredicted RBP12.5□□□□□ -0.41
NUP54-216ENST00000514901 FASP25445 335 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 SDHAP31040 664 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 ERFP50548 548 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 ZNF84P51523 738 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 ZNF133P52736 654 aaPredicted RBP12.5□□□□□ -0.41
NUP54-216ENST00000514901 PPP1R8Q12972 351 aaKnown RBP12.5□□□□□ -0.41
NUP54-216ENST00000514901 ALKBH2Q6NS38 261 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 CD300LDQ6UXZ3 194 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 RASSF6Q6ZTQ3 369 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 FAM122BQ7Z309 247 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 CLDN22Q8N7P3 220 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 SYT14Q8NB59 555 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 OR52N5Q8NH56 324 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 HDAC2Q92769 488 aaKnown RBP12.5□□□□□ -0.41
NUP54-216ENST00000514901 ZNF837Q96EG3 531 aaPredicted RBP12.5□□□□□ -0.41
NUP54-216ENST00000514901 KCNK17Q96T54 332 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 BDH2Q9BUT1 245 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 OR52D1Q9H346 318 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 EDARQ9UNE0 448 aa12.5□□□□□ -0.41
NUP54-216ENST00000514901 HEATR1Q9H583 2144 aaKnown RBP12.5□□□□□ -0.41
NUP54-216ENST00000514901 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.49□□□□□ -0.41
NUP54-216ENST00000514901 ARPC3O15145 178 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 TIPRLO75663 272 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 TXNDC12O95881 172 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ANXA8P13928 327 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 FXYD6P3P58550 94 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 CD47Q08722 323 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ATP6AP1Q15904 470 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 NRN1LQ496H8 165 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 HIKESHIQ53FT3 197 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 C10orf128Q5T292 105 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ZFP1Q6P2D0 407 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 SHQ1Q6PI26 577 aaKnown RBP12.49□□□□□ -0.41
NUP54-216ENST00000514901 THSD4Q6ZMP0 1018 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ZNF813Q6ZN06 617 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ZNF620Q6ZNG0 422 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 DPPA2Q7Z7J5 298 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ADCK1Q86TW2 530 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 FAM169BQ8N8A8 192 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 OR52L1Q8NGH7 329 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 PIK3IP1Q96FE7 263 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 PLPPR2Q96GM1 343 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 SAMD8Q96LT4 415 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 Q96M85 177 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 ZNF570Q96NI8 536 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 FEVQ99581 238 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 FOXB1Q99853 325 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 IFT27Q9BW83 186 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 DENND2DQ9H6A0 471 aaPredicted RBP12.49□□□□□ -0.41
NUP54-216ENST00000514901 ZNF556Q9HAH1 456 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 IL20Q9NYY1 176 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 PDP1Q9P0J1 537 aaPredicted RBP12.49□□□□□ -0.41
NUP54-216ENST00000514901 ADAM18Q9Y3Q7 739 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 IER3IP1Q9Y5U9 82 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 CDH10Q9Y6N8 788 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 NAV2Q8IVL1 2488 aa12.49□□□□□ -0.41
NUP54-216ENST00000514901 A0A096LPE4 126 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 A0A1W2PPZ6 126 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 SIAH2O43255 324 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 ARHGEF9O43307 516 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 FARS2O95363 451 aaKnown RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 CD3EP07766 207 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 NPR2P20594 1047 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 PTAFRP25105 342 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 GUCA1AP43080 201 aaPredicted RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 IST1P53990 364 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 KPNB1Q14974 876 aaKnown RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 C3orf36Q3SXR2 165 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 NCMAPQ5T1S8 102 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 SLC25A47Q6Q0C1 308 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 SEZ6L2Q6UXD5 910 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 TMEM108Q6UXF1 575 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 CDC20BQ86Y33 519 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 NANOS1Q8WY41 292 aaKnown RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 GTPBP3Q969Y2 492 aaKnown RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 NMD3Q96D46 503 aaKnown RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 RADILQ96JH8 1075 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 ERMAPQ96PL5 475 aaPredicted RBP12.48□□□□□ -0.41
NUP54-216ENST00000514901 NELFAQ9H3P2 528 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 TMEM38BQ9NVV0 291 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 IL20RAQ9UHF4 553 aa12.48□□□□□ -0.41
NUP54-216ENST00000514901 FBN2P35556 2912 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 TEX13CA0A0J9YWL9 993 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 PRSS37A4D1T9 235 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 OR8G3PP0DMU2 310 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 LOXP28300 417 aaPredicted RBP12.47□□□□□ -0.41
NUP54-216ENST00000514901 NOS3P29474 1203 aa12.47□□□□□ -0.41
NUP54-216ENST00000514901 MYBPC1Q00872 1141 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms