RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 FAM205BPQ63HN1 556 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 NHLRC1Q6VVB1 395 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 PXKQ7Z7A4 578 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ZBTB46Q86UZ6 589 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 KLBQ86Z14 1044 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 PM20D2Q8IYS1 436 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 OR6V1Q8N148 313 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 RFLNBQ8N5W9 214 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ZFP62Q8NB50 900 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 TBC1D15Q8TC07 691 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 MIB2Q96AX9 1013 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 DACH2Q96NX9 599 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ZNF703Q9H7S9 590 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 MARCH7Q9H992 704 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ZNF71Q9NQZ8 489 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 BABAM2Q9NXR7 383 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 B3GAT1Q9P2W7 334 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 RPH3AQ9Y2J0 694 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 MRPS18CQ9Y3D5 142 aaKnown RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 A0A1W2PNR3 127 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 FAM166BA8MTA8 275 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 GLSO94925 669 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 PMS2P2O95744 297 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 GABRA5P31644 462 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SFTPDP35247 375 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 P2RY4P51582 365 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 OR2B6P58173 313 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 B3GALT5-AS1P59052 145 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ACTA2P62736 377 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ACTG2P63267 376 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ROR2Q01974 943 aaKnown RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 PLGLB1Q02325 96 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 GPR50Q13585 617 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 DGUOKQ16854 277 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 TMEM176BQ3YBM2 270 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 RAET1LQ5VY80 246 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 CD200R1LQ6Q8B3 271 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 LYPD4Q6UWN0 246 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ASB18Q6ZVZ8 466 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SSX6Q7RTT6 188 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SLC16A9Q7RTY1 509 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 TIGD4Q8IY51 512 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SYS1Q8N2H4 156 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 KDM8Q8N371 416 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SMAP2Q8WU79 429 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 RNF167Q9H6Y7 350 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SRA1Q9HD15 236 aaKnown RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 TRIM36Q9NQ86 728 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 B4GALT7Q9UBV7 327 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SSR3Q9UNL2 185 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 IGLV1-36A0A0B4J1U3 117 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 SLC22A23A1A5C7 686 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 NPIPA5E9PKD4 350 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 SEC14L5O43304 696 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 IFNGR1P15260 489 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 MAGEA5P43359 124 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 SERPINB10P48595 397 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 CENPAP49450 140 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 TAS2R43P59537 309 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 RPS25P62851 125 aaKnown RBP12.68□□□□□ -0.38
CUX1-209ENST00000487284 SLC35A1P78382 337 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 POU3F1Q03052 451 aaPredicted RBP12.68□□□□□ -0.38
CUX1-209ENST00000487284 MELKQ14680 651 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 CDONQ4KMG0 1287 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 RNFT1Q5M7Z0 435 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 VASNQ6EMK4 673 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 LINC00299Q6ZSB3 139 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 TMPPEQ6ZT21 453 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 SLC35D2Q76EJ3 337 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 VASH1Q7L8A9 365 aaPredicted RBP12.68□□□□□ -0.38
CUX1-209ENST00000487284 YRDCQ86U90 279 aaKnown RBP12.68□□□□□ -0.38
CUX1-209ENST00000487284 TMEM251Q8N6I4 163 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 ZFP41Q8N8Y5 198 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 ZNF511Q8NB15 262 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 FAM83FQ8NEG4 500 aaPredicted RBP12.68□□□□□ -0.38
CUX1-209ENST00000487284 TRMT61AQ96FX7 289 aaKnown RBP12.68□□□□□ -0.38
CUX1-209ENST00000487284 C4orf36Q96KX1 117 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 PIGQQ9BRB3 760 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 OR2B2Q9GZK3 357 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 NUAK2Q9H093 628 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 NPIPA1Q9UND3 350 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 B9D1Q9UPM9 204 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 PMF1-BGLAPU3KQ54 211 aa12.68□□□□□ -0.38
CUX1-209ENST00000487284 PNMA8CA0A1B0GUJ8 204 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 LOC102725191A0A1B0GVB3 256 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 AQP7P3A6NL99 342 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 FAM171A2A8MVW0 826 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 ZNF670-ZNF695F2Z2N8 137 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 SULT2B1O00204 365 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 TRAPPC6AO75865 159 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 OPN1LWP04000 364 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 CELA3AP09093 270 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 CELP19835 753 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 BLVRAP53004 296 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 HCCSP53701 268 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 OR12D2P58182 307 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 RAC1P63000 192 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 HYAL4Q2M3T9 481 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 DTNBP1Q96EV8 351 aa12.67□□□□□ -0.38
CUX1-209ENST00000487284 MRPL48Q96GC5 212 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms