RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 FAM122CQ6P4D5 195 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 MRPL41Q8IXM3 137 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 NAT6Q93015 286 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 HINT3Q9NQE9 182 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 C19orf53Q9UNZ5 99 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 BTAF1O14981 1849 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 ZC3H12DA2A288 527 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 BET1O15155 118 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 SIX6O95475 246 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 MT-ATP6P00846 226 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 TRMT12Q53H54 448 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 SDF2Q99470 211 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 OBP2BQ9NPH6 170 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 AKIP1Q9NQ31 210 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 CHST2Q9Y4C5 530 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 ANXA7P20073 488 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 PTOV1Q86YD1 416 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 HSD17B8Q92506 261 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 C3orf49Q96BT1 292 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 MED30Q96HR3 178 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 RNF212BA8MTL3 300 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 GABREP78334 506 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 PMPCAQ10713 525 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 RABEPKQ7Z6M1 372 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 OPALINQ96PE5 141 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 MBNL1Q9NR56 388 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 CMC2Q9NRP2 79 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 PLSCR5A0PG75 271 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 E9PI62 339 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 B4GALT3O60512 393 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 ALX3O95076 343 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 APEHP13798 732 aaKnown RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 CPT2P23786 658 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 TAAR8Q969N4 342 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 NXPE3Q969Y0 559 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 TCEAL2Q9H3H9 227 aaPredicted RBP15.12■□□□□ 0.01
COL7A1-210ENST00000487017 DAPP1Q9UN19 280 aa15.12■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF728P0DKX0 622 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 DPTQ07507 201 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TMEM31Q5JXX7 168 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 PAPD4Q6PIY7 484 aaKnown RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 MARCH3Q86UD3 253 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 OR51S1Q8NGJ8 323 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 CPNE4Q96A23 557 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF775Q96BV0 537 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 RBMXL1Q96E39 390 aaKnown RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SGPP1Q9BX95 441 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 PRMT8Q9NR22 394 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 NUMBLQ9Y6R0 609 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TMEM200CA6NKL6 621 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 OIP5O43482 229 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TMPRSS11DO60235 418 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 CNR1P21554 472 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 IRS1P35568 1242 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 KIAA1024LP59773 190 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SRPXP78539 464 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF77Q15935 545 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 ZMAT3Q9HA38 289 aaKnown RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 BOKQ9UMX3 212 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 MCRIP1C9JLW8 97 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 GIPP09681 153 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 IL2RGP31785 369 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TAS2R30P59541 319 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 LPCAT3Q6P1A2 487 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 DCXRQ7Z4W1 244 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF808Q8N4W9 903 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SAT2Q96F10 170 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 NTN4Q9HB63 628 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SLC25A19Q9HC21 320 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TRBV5-4A0A0C4DH59 114 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TSTD3H0UI37 97 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 HOXC11O43248 304 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SLC2A10O95528 541 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 CXCL12P48061 93 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 LBX1P52954 281 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 AQP6Q13520 282 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SPNS2Q8IVW8 549 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 FAM213BQ8TBF2 198 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 WBP2Q969T9 261 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF845Q96IR2 970 aaPredicted RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 DHCR7Q9UBM7 475 aaKnown RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 PUS1Q9Y606 427 aaKnown RBP eCLIP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 TNFSF4P23510 183 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 RACK1P63244 317 aaKnown RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 MRPL58Q14197 206 aaKnown RBP15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SFRP5Q5T4F7 317 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 C1orf140Q5VVS0 124 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 AAED1Q7RTV5 226 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 SYT9Q86SS6 491 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 OCSTAMPQ9BR26 566 aa15.11■□□□□ 0.01
COL7A1-210ENST00000487017 LPLP06858 475 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 PRPH2P23942 346 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 PRAMEF20Q5VT98 475 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 AADACL3Q5VUY0 350 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 LRFN5Q96NI6 719 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 DDOQ99489 341 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 ZNF416Q9BWM5 594 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 SAMD10Q9BYL1 202 aa15.1■□□□□ 0.01
COL7A1-210ENST00000487017 A0A1B0GTL3 188 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms