RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 FOXB1Q99853 325 aa17.38■□□□□ 0.37
COL9A3-204ENST00000463487 MRPL13Q9BYD1 178 aaKnown RBP17.38■□□□□ 0.37
COL9A3-204ENST00000463487 ESRP2Q9H6T0 727 aaKnown RBP17.38■□□□□ 0.37
COL9A3-204ENST00000463487 SLC17A5Q9NRA2 495 aa17.38■□□□□ 0.37
COL9A3-204ENST00000463487 TBC1D23Q9NUY8 699 aa17.38■□□□□ 0.37
COL9A3-204ENST00000463487 ADAM18Q9Y3Q7 739 aa17.38■□□□□ 0.37
COL9A3-204ENST00000463487 IMPA2O14732 288 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 ARHGEF9O43307 516 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 DHHO43323 396 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 FARS2O95363 451 aaKnown RBP17.37■□□□□ 0.37
COL9A3-204ENST00000463487 FOXG1P55316 489 aaPredicted RBP17.37■□□□□ 0.37
COL9A3-204ENST00000463487 KRR1Q13601 381 aaKnown RBP17.37■□□□□ 0.37
COL9A3-204ENST00000463487 HIST3H3Q16695 136 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 TBRG1Q3YBR2 411 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 PHYHD1Q5SRE7 291 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 CD300LDQ6UXZ3 194 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 THSD4Q6ZMP0 1018 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 FAM122BQ7Z309 247 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 JAZF1Q86VZ6 243 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 ZDHHC13Q8IUH4 622 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 SVOPLQ8N434 492 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 PYDC1Q8WXC3 89 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 HDAC2Q92769 488 aaKnown RBP17.37■□□□□ 0.37
COL9A3-204ENST00000463487 MCHR2Q969V1 340 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 SAMD8Q96LT4 415 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 Q96M85 177 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 ERMAPQ96PL5 475 aaPredicted RBP17.37■□□□□ 0.37
COL9A3-204ENST00000463487 IL20Q9NYY1 176 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 IL20RAQ9UHF4 553 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 BAIAP2Q9UQB8 552 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 IER3IP1Q9Y5U9 82 aa17.37■□□□□ 0.37
COL9A3-204ENST00000463487 TEX13CA0A0J9YWL9 993 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 G3V2T6 193 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 ARPC3O15145 178 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 MGRN1O60291 552 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 PPP1R3DO95685 299 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 THBDP07204 575 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF23P17027 643 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF26P17031 533 aaPredicted RBP17.36■□□□□ 0.37
COL9A3-204ENST00000463487 RUNX1T1Q06455 604 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF813Q6ZN06 617 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF295-AS1Q8N0V1 137 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 TEX47Q8TBZ9 253 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 BCL2L2Q92843 193 aaPredicted RBP17.36■□□□□ 0.37
COL9A3-204ENST00000463487 CENPNQ96H22 339 aaPredicted RBP17.36■□□□□ 0.37
COL9A3-204ENST00000463487 DENND2DQ9H6A0 471 aaPredicted RBP17.36■□□□□ 0.37
COL9A3-204ENST00000463487 EGLN3Q9H6Z9 239 aa17.36■□□□□ 0.37
COL9A3-204ENST00000463487 ARPC4-TTLL3A0A0A6YYG9 625 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 H3BN98 237 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 SOCS2O14508 198 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 CTAG2O75638 210 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 TXNDC12O95881 172 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 FXYD6P3P58550 94 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 MYBPC1Q00872 1141 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 NRN1LQ496H8 165 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 HIKESHIQ53FT3 197 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 C10orf128Q5T292 105 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 LRFN4Q6PJG9 635 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 DNM1P34Q6PK57 102 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 TMEM108Q6UXF1 575 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF627Q7L945 461 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 LRTOMTQ8WZ04 291 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 PIK3IP1Q96FE7 263 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 CLEC4MQ9H2X3 399 aaPredicted RBP17.35■□□□□ 0.37
COL9A3-204ENST00000463487 RASSF1Q9NS23 344 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 SLC25A15Q9Y619 301 aa17.35■□□□□ 0.37
COL9A3-204ENST00000463487 UTP20O75691 2785 aaKnown RBP17.34■□□□□ 0.37
COL9A3-204ENST00000463487 ASH1LQ9NR48 2969 aaKnown RBP17.34■□□□□ 0.37
COL9A3-204ENST00000463487 A0A096LPE4 126 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 A0A1W2PPZ6 126 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 PRSS37A4D1T9 235 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 RENP00797 406 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 OR8G3PP0DMU2 310 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 NPR2P20594 1047 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 CAPZA2P47755 286 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF133P52736 654 aaPredicted RBP17.34■□□□□ 0.37
COL9A3-204ENST00000463487 MESTQ5EB52 335 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 CLEC12AQ5QGZ9 265 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 DPPA2Q7Z7J5 298 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 TMEM179BQ7Z7N9 219 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 AMIGO2Q86SJ2 522 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 WDFY1Q8IWB7 410 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 OR2T33Q8NG76 320 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 RASD2Q96D21 266 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 ZNF837Q96EG3 531 aaPredicted RBP17.34■□□□□ 0.37
COL9A3-204ENST00000463487 NIPSNAP1Q9BPW8 284 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 TEX12Q9BXU0 123 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 KCNN2Q9H2S1 579 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 NTN4Q9HB63 628 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 ENOPH1Q9UHY7 261 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 EDARQ9UNE0 448 aa17.34■□□□□ 0.37
COL9A3-204ENST00000463487 ALPK2Q86TB3 2170 aa17.33■□□□□ 0.37
COL9A3-204ENST00000463487 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.33■□□□□ 0.36
COL9A3-204ENST00000463487 SOX14O95416 240 aa17.33■□□□□ 0.36
COL9A3-204ENST00000463487 B4GALT1P15291 398 aa17.33■□□□□ 0.36
COL9A3-204ENST00000463487 CRABP1P29762 137 aa17.33■□□□□ 0.36
COL9A3-204ENST00000463487 C22orf34Q6ZV56 151 aa17.33■□□□□ 0.36
COL9A3-204ENST00000463487 PLPPR2Q96GM1 343 aa17.33■□□□□ 0.36
COL9A3-204ENST00000463487 SNX18Q96RF0 628 aa17.33■□□□□ 0.36
COL9A3-204ENST00000463487 TSSK6Q9BXA6 273 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms