RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 PGA3P0DJD8 388 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 SMIM18P0DKX4 95 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 PSKH1P11801 424 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 ATP6V1B1P15313 513 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 ACVR2AP27037 513 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 CDH15P55291 814 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 FOXF2Q12947 444 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 GPR139Q6DWJ6 353 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 NIPAL3Q6P499 406 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 LRFN4Q6PJG9 635 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 GFRALQ6UXV0 394 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 LINGO2Q7L985 606 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 CHMP1BQ7LBR1 199 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 SHFQ7M4L6 423 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 DOLPP1Q86YN1 238 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 GCNT2Q8N0V5 402 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 TMEM123Q8N131 208 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 SLC43A2Q8N370 569 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 TSPAN14Q8NG11 270 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 FAM57AQ8TBR7 257 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 TRUB1Q8WWH5 349 aaKnown RBP9.73□□□□□ -0.85
SCN9A-205ENST00000454569 NMD3Q96D46 503 aaKnown RBP9.73□□□□□ -0.85
SCN9A-205ENST00000454569 ZHX1-C8orf76Q96EF9 292 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 PLEKHA8Q96JA3 519 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 SF3B5Q9BWJ5 86 aaKnown RBP9.73□□□□□ -0.85
SCN9A-205ENST00000454569 YTHDF1Q9BYJ9 559 aaKnown RBP9.73□□□□□ -0.85
SCN9A-205ENST00000454569 PRRG4Q9BZD6 226 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 OR51V1Q9H2C8 321 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 RNF122Q9H9V4 155 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 CALHM2Q9HA72 323 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 KLHL21Q9UJP4 597 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 TINAGQ9UJW2 476 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 BLOC1S6Q9UL45 172 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 MCTS1Q9ULC4 181 aaKnown RBP9.73□□□□□ -0.85
SCN9A-205ENST00000454569 ZNF835Q9Y2P0 537 aa9.73□□□□□ -0.85
SCN9A-205ENST00000454569 DIDO1Q9BTC0 2240 aaKnown RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 IGKV3D-15A0A087WSY6 115 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 PRSS37A4D1T9 235 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 NPIPB13A6NJU9 1138 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 RIIAD1A6NNX1 92 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 AHRRA9YTQ3 701 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 NPIPB4C9JG80 1138 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 PRR23D1E9PI22 279 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 SLC1A7O00341 560 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 UPK3AO75631 287 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 CLPTM1O96005 669 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 IGHV3-9P01782 118 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 SCG5P05408 212 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 HTR1AP08908 422 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 PRR23D2P0DMB1 279 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 CTLA4P16410 223 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 SPI1P17947 270 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 CRHBPP24387 322 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 FOXG1P55316 489 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 APOFQ13790 326 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 C4orf17Q53FE4 359 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 SLC25A30Q5SVS4 291 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 LINC01590Q5TEZ4 76 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 JAZF1Q86VZ6 243 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 NAXEQ8NCW5 288 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 OR6X1Q8NH79 312 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 CPT1CQ8TCG5 803 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 GGHQ92820 318 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 SLC25A44Q96H78 314 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 RERGLQ9H628 205 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 PAQR5Q9NXK6 330 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 VSX1Q9NZR4 365 aaPredicted RBP9.72□□□□□ -0.85
SCN9A-205ENST00000454569 HIVEP3Q5T1R4 2406 aa9.72□□□□□ -0.85
SCN9A-205ENST00000454569 IGLV1-36A0A0B4J1U3 117 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 PTGES3LE9PB15 166 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 SLC16A7O60669 478 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 MPZL1O95297 269 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 PRB1P04280 392 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 SFTPCP11686 197 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 ABOP16442 354 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 ZNF3P17036 446 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 VAMP1P23763 118 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 EEF1B2P24534 225 aaKnown RBP9.71□□□□□ -0.85
SCN9A-205ENST00000454569 SLC15A1P46059 708 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 DAP3P51398 398 aaKnown RBP9.71□□□□□ -0.85
SCN9A-205ENST00000454569 HCCSP53701 268 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 GABARAPL2P60520 117 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 ZNF91Q05481 1191 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 DOC2BQ14184 412 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 GUSBP1Q15486 140 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 HIST3H3Q16695 136 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 KLHL12Q53G59 568 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 NXNL2Q5VZ03 156 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 NSUN5P2Q63ZY6 315 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 MEPCEQ7L2J0 689 aaKnown RBP9.71□□□□□ -0.85
SCN9A-205ENST00000454569 TMEM54Q969K7 222 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 INTS12Q96CB8 462 aaKnown RBP9.71□□□□□ -0.85
SCN9A-205ENST00000454569 WBP1Q96G27 269 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 TEAD3Q99594 435 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 BCO1Q9HAY6 547 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 CLN6Q9NWW5 311 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 ERVK-18Q9QC07 812 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 SH3BGRL2Q9UJC5 107 aa9.71□□□□□ -0.85
SCN9A-205ENST00000454569 FOXD3Q9UJU5 478 aaPredicted RBP9.71□□□□□ -0.85
SCN9A-205ENST00000454569 B9D1Q9UPM9 204 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms