RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 VASNQ6EMK4 673 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 C22orf42Q6IC83 251 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 LSRQ86X29 649 aaPredicted RBP12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ELOA3Q8NG57 546 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 AP3S1Q92572 193 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 PTP4A1Q93096 173 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 RELTQ969Z4 430 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 TEAD3Q99594 435 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 TIMP4Q99727 224 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 KCNS3Q9BQ31 491 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 TMEM43Q9BTV4 400 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ALG8Q9BVK2 526 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 TMEM185BQ9H7F4 350 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 C12orf10Q9HB07 376 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 ABCB10Q9NRK6 738 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 SPRR3Q9UBC9 169 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 CHRNA9Q9UGM1 479 aa12.02□□□□□ -0.49
LIMS1-204ENST00000409441 DAPL1A0PJW8 107 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 TMEM72A0PK05 275 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 AQP7O14520 342 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 CTDSP2O14595 271 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 ZNHIT1O43257 154 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 TBX1O43435 398 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 IDH3BO43837 385 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 OR7A10O76100 309 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 PRB1P04280 392 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 NOS3P29474 1203 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 MAP2K6P52564 334 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 TAS2R43P59537 309 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 FABP5Q01469 135 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 TRAM1Q15629 374 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 TMEM176BQ3YBM2 270 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-204ENST00000409441 DPY19L2P2Q6ZN68 376 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 GHDCQ8N2G8 530 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 ARIH2OSQ8N7S6 290 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 MED20Q9H944 212 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 CMAHPQ9Y471 501 aa12.01□□□□□ -0.49
LIMS1-204ENST00000409441 NPIPA2E9PIF3 369 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 NPIPA3F8WFD2 350 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 ARPC3O15145 178 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 ZNF208O43345 1280 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 PTTG1O95997 202 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 LALBAP00709 142 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 HNRNPCP07910 306 aaKnown RBP eCLIP12□□□□□ -0.49
LIMS1-204ENST00000409441 FREM3P0C091 2139 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SBK2P0C263 348 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 TFPIP10646 304 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 POU3F2P20265 443 aaPredicted RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 FKBP2P26885 142 aaKnown RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 TNFSF8P32971 234 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 RANBP1P43487 201 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 LHX2P50458 406 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SELENBP1Q13228 472 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 CRMP1Q14194 572 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 BCL2A1Q16548 175 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 KLHL12Q53G59 568 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 LCN1P1Q5VSP4 162 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 STEAP3Q658P3 488 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 GFRALQ6UXV0 394 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 KLBQ86Z14 1044 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SNX29P2Q8IUI4 249 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 LIPHQ8WWY8 451 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SMPDL3BQ92485 455 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 TMEM203Q969S6 136 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SARAFQ96BY9 339 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 ERMAPQ96PL5 475 aaPredicted RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 GPX7Q96SL4 187 aaPredicted RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 HCAR1Q9BXC0 346 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 TRIM36Q9NQ86 728 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 BABAM2Q9NXR7 383 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 OR14I1A6ND48 311 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 GJE1A6NN92 205 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 A8MVM7 634 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 MT-ND5P03915 603 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 EDN3P14138 238 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 CELP19835 753 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 CFL1P23528 166 aaKnown RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 SHC1P29353 583 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SDC2P34741 201 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SFTPDP35247 375 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 PTGS2P35354 604 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SUCLG1P53597 346 aaKnown RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 CLDN20P56880 219 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 DEFA1P59665 94 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 DEFA3P59666 94 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 PRPS1P60891 318 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 RPS7P62081 194 aaKnown RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 RPS4XP62701 263 aaKnown RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 SRYQ05066 204 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 LGALS3BPQ08380 585 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 HNRNPA0Q13151 305 aaKnown RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 C3orf33Q6P1S2 294 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 FGD2Q7Z6J4 655 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 UBQLNLQ8IYU4 475 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 TMEM99Q8N816 258 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 SLC25A43Q8WUT9 341 aaPredicted RBP12□□□□□ -0.49
LIMS1-204ENST00000409441 DDIT4LQ96D03 193 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 TM9SF2Q99805 663 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 OR11A1Q9GZK7 315 aa12□□□□□ -0.49
LIMS1-204ENST00000409441 OR51V1Q9H2C8 321 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms