RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ALDH3A2P51648 485 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 ZNF133P52736 654 aaPredicted RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 SLC34A1Q06495 639 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 DAG1Q14118 895 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 HIST3H3Q16695 136 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 RFX4Q33E94 735 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 ALG10Q5BKT4 473 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 ANKRD34AQ69YU3 496 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 TMEM225Q6GV28 225 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 SMARCD3Q6STE5 483 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 DPY19L2P2Q6ZN68 376 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 HIST3H2AQ7L7L0 130 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 STK32CQ86UX6 486 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 TUSC5Q8IXB3 177 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 TMEM123Q8N131 208 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 C10orf53Q8N6V4 93 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 PACRGLQ8N7B6 248 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 OR8D4Q8NGM9 314 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 OR6K3Q8NGY3 331 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 OR6X1Q8NH79 312 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 MOSPD2Q8NHP6 518 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 HIST1H2ACQ93077 130 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 RNASE6Q93091 150 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 STARD4Q96DR4 205 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 ZC3HAV1LQ96H79 300 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 ADAD1Q96M93 576 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 ZNF385AQ96PM9 386 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 CIB1Q99828 191 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 RBM4BQ9BQ04 359 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 RBM4Q9BWF3 364 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 RBM24Q9BX46 236 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 GABARAPL3Q9BY60 117 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 MRPL13Q9BYD1 178 aaKnown RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 PLA2G12AQ9BZM1 189 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 OR52D1Q9H346 318 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 TXNIPQ9H3M7 391 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 PLSCR4Q9NRQ2 329 aa8.11□□□□□ -1.11
VPS53-203ENST00000401468 FOXD3Q9UJU5 478 aaPredicted RBP8.11□□□□□ -1.11
VPS53-203ENST00000401468 TUBAL3A6NHL2 446 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 SAC3D1A6NKF1 404 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 BLOC1S5-TXNDC5H3BN57 136 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 PDLIM1O00151 329 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 DLGAP1O14490 977 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 EI24O14681 340 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 IDH3BO43837 385 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 AHCYL1O43865 530 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ATP6V1G2O95670 118 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 CD14P08571 375 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 OSMP13725 252 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 POU2F1P14859 743 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ZNF43P17038 809 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 OPRM1P35372 400 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 OR3A2P47893 321 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ESRRGP62508 458 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 CDK5Q00535 292 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 FAM27E3Q08E93 113 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 FOXD4Q12950 439 aaPredicted RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 STK11Q15831 433 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 FBXL19-AS1Q494R0 122 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ZNF362Q5T0B9 420 aaPredicted RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 FAM205BPQ63HN1 556 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ALKBH2Q6NS38 261 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 TFAP2EQ6VUC0 442 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 P4HA3Q7Z4N8 544 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 GALNT5Q7Z7M9 940 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 WDFY1Q8IWB7 410 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 UEVLDQ8IX04 471 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 KDM8Q8N371 416 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 LNX2Q8N448 690 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 CBR4Q8N4T8 237 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ATG16L2Q8NAA4 619 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ICA1LQ8NDH6 482 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 OR51A7Q8NH64 312 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 FANK1Q8TC84 345 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ASB10Q8WXI3 467 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 NMD3Q96D46 503 aaKnown RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 BOD1Q96IK1 185 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 LRR1Q96L50 414 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 RDH12Q96NR8 316 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 SNX18Q96RF0 628 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 DDOQ99489 341 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 SLC29A1Q99808 456 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 SMR3AQ99954 134 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 PRRG4Q9BZD6 226 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 LINC00470Q9BZP3 86 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 NDEL1Q9GZM8 345 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 PIGMQ9H3S5 423 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 GSX1Q9H4S2 264 aaPredicted RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 EGLN3Q9H6Z9 239 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 SMURF2Q9HAU4 748 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 SLC25A19Q9HC21 320 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 PAPOLBQ9NRJ5 636 aaKnown RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 INIPQ9NRY2 104 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 RASSF1Q9NS23 344 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 PARPBPQ9NWS1 579 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 ENOPH1Q9UHY7 261 aa8.1□□□□□ -1.11
VPS53-203ENST00000401468 CHD3Q12873 2000 aaKnown RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 YLPM1P49750 1951 aaKnown RBP8.1□□□□□ -1.11
VPS53-203ENST00000401468 A0A1W2PRG6 482 aa8.09□□□□□ -1.11
VPS53-203ENST00000401468 OR6C65A6NJZ3 312 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms