RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ATP6V0D2Q8N8Y2 350 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 OR6N2Q8NGY6 317 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 OR4Q3Q8NH05 313 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 MRAPQ8TCY5 172 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TBCKQ8TEA7 893 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TM9SF4Q92544 642 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TOMM40LQ969M1 308 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 NEIL2Q969S2 332 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 RANBP9Q96S59 729 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 UTP23Q9BRU9 249 aaKnown RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 NAA50Q9GZZ1 169 aaKnown RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 SLC22A4Q9H015 551 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 LHX5Q9H2C1 402 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF334Q9HCZ1 680 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 VCX3AQ9NNX9 186 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 SIRT7Q9NRC8 400 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 EXD2Q9NVH0 621 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TEX10Q9NXF1 929 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 MAT2BQ9NZL9 334 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 FAF1Q9UNN5 650 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 PPP2R2CQ9Y2T4 447 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 KCNIP3Q9Y2W7 256 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 C9orf84Q5VXU9 1444 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 TRAPPC8Q9Y2L5 1435 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 MN1Q10571 1320 aaPredicted RBP3.46□□□□□ -1.86
HMGB1-204ENST00000399489 HECW1Q76N89 1606 aa3.46□□□□□ -1.86
HMGB1-204ENST00000399489 CPDO75976 1380 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 IGLV9-49A0A0B4J1Y8 123 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 CYSRT1A8MQ03 144 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF724A8MTY0 619 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 TRDCB7Z8K6 153 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 AQP9O43315 295 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 CTSVO60911 334 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 OR7A10O76100 309 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 TNNC2P02585 160 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 GPIP06744 558 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 HLA-DMAP28067 261 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 PSMB5P28074 263 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 HOXD3P31249 432 aaPredicted RBP3.45□□□□□ -1.86
HMGB1-204ENST00000399489 CD79BP40259 229 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 MAGEA2P43356 314 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ALDH3B2P48448 385 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 KPNA2P52292 529 aaKnown RBP3.45□□□□□ -1.86
HMGB1-204ENST00000399489 PLK1P53350 603 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 NUP107P57740 925 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 MAGOHP61326 146 aaKnown RBP3.45□□□□□ -1.86
HMGB1-204ENST00000399489 CD226Q15762 336 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 UPP1Q16831 310 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 EIPR1Q53HC9 387 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ACTBL2Q562R1 376 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 TPRG1LQ5T0D9 272 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 PVRIGQ6DKI7 326 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF547Q8IVP9 402 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 SLC22A15Q8IZD6 547 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 KBTBD8Q8NFY9 601 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 OR5D18Q8NGL1 313 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 OR1S2Q8NGQ3 325 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 OR6F1Q8NGZ6 308 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ZPLD1Q8TCW7 415 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ACER1Q8TDN7 264 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 SETD7Q8WTS6 366 aaKnown RBP3.45□□□□□ -1.86
HMGB1-204ENST00000399489 UFD1Q92890 307 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM143Q96AN5 459 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ZFP3Q96NJ6 502 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 CHRNA10Q9GZZ6 450 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 MMP28Q9H239 520 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 PATZ1Q9HBE1 687 aaKnown RBP3.45□□□□□ -1.86
HMGB1-204ENST00000399489 SAMSN1Q9NSI8 373 aaKnown RBP3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ERGIC3Q9Y282 383 aa3.45□□□□□ -1.86
HMGB1-204ENST00000399489 ALKQ9UM73 1620 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 A0A1B0GVT2 93 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RPS10-NUDT3A0A1W2PQS6 291 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 CLDN34H7C241 214 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TNFSF11O14788 317 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SPRY3O43610 288 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SMIM24O75264 130 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DUSP11O75319 330 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 LYPD3O95274 346 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 DEXIO95424 95 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SLC35E2P0CK97 266 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RPL35AP18077 110 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FASP25445 335 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FOXN2P32314 431 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 YAP1P46937 504 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SPCS3P61009 180 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 HERV-K104P61576 105 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 RPS14P62263 151 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TRIM16LQ309B1 348 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TRMT5Q32P41 509 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 NDUFAF6Q330K2 333 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ZCWPW2Q504Y3 356 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF324BQ6AW86 544 aaPredicted RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 FAHD1Q6P587 224 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 PRSS57Q6UWY2 283 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 MOB2Q70IA6 237 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 SMIM15Q7Z3B0 74 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 NUFIP2Q7Z417 695 aaKnown RBP3.44□□□□□ -1.86
HMGB1-204ENST00000399489 ZFAND4Q86XD8 727 aa3.44□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM25Q86YD3 366 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms