RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 GGTA1PQ4G0N0 100 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 DMRTA1Q5VZB9 504 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 METTL7BQ6UX53 244 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TMIGD1Q6UXZ0 262 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ACOT7LQ6ZUV0 252 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 GEMIN6Q8WXD5 167 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SAMD8Q96LT4 415 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PMCHL2Q9BQD1 86 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ZDHHC8Q9ULC8 765 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ADGRL3Q9HAR2 1447 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 FAM171A2A8MVW0 826 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ALOX15BO15296 676 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PHF1O43189 567 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 HBP1O60381 514 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 CHRM2P08172 466 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SELEP16581 610 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 WNT5AP41221 380 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OR1E2P47887 323 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 BPIFB3P59826 476 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TMEM258P61165 79 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SH3BP2P78314 561 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SKP2Q13309 424 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 GID4Q8IVV7 300 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PLPP6Q8IY26 295 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ZBTB2Q8N680 514 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 B3GNT7Q8NFL0 401 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OR8B3Q8NGG8 313 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 NEURL2Q9BR09 285 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 WDR61Q9GZS3 305 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TREM2Q9NZC2 230 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 CNTN3Q9P232 1028 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC35A3Q9Y2D2 325 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TMED3Q9Y3Q3 217 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF28P17035 718 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 TEKQ02763 1124 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 DLX2Q07687 328 aaPredicted RBP7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC10A2Q12908 348 aaPredicted RBP7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 ALKBH1Q13686 389 aaKnown RBP7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 VWA2Q5GFL6 755 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 ZNF765Q7L2R6 523 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 ADGRG3Q86Y34 549 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 ANKRD29Q8N6D5 301 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 OR4K13Q8NH42 304 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM163Q8TC26 289 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 HAVCR2Q8TDQ0 301 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 DUSP26Q9BV47 211 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 IL22Q9GZX6 179 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 TKTL2Q9H0I9 626 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 SIRT7Q9NRC8 400 aa7.09□□□□□ -1.28
LIMCH1-201ENST00000313860 OR52A4PA6NMU1 304 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 A8MWL6 223 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 DIRC3C9JPN6 131 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 MGST3O14880 152 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TMEM50AO95807 157 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ALPLP05186 524 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ADH4P08319 380 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ALDOCP09972 364 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SOX9P48436 509 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 RCAN1P53805 252 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 LGALS4P56470 323 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TAS2R45P59539 299 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SPATA31D4Q6ZUB0 917 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OTOP2Q7RTS6 562 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 TCEAL8Q8IYN2 117 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PRDM12Q9H4Q4 367 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 INPP5EQ9NRR6 644 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 NAT8Q9UHE5 227 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CBLCQ9ULV8 474 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 OR1A2Q9Y585 309 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 HEMK1Q9Y5R4 338 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 A0A1W2PP64 1363 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 HECW2Q9P2P5 1572 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CCL15-CCL14A0A0B4J2E2 113 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PQLC2LA1A4F0 135 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 HACD1B0YJ81 288 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PRAF2O60831 178 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 EDF1O60869 148 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CSF3P09919 207 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 VIPR2P41587 438 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CDK5R2Q13319 367 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC22A6Q4U2R8 563 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 FAM209BQ5JX69 171 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 PAQR6Q6TCH4 344 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CEACAM20Q6UY09 585 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 LINC00696Q6ZRV3 163 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 GRINAQ7Z429 371 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 NETO2Q8NC67 525 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 Q8WTZ3 238 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 LCN9Q8WX39 176 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 GPR78Q96P69 363 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 AUNIPQ9H7T9 357 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 CLDN16Q9Y5I7 305 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 SETBP1Q9Y6X0 1596 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 A0A1W2PQ45 241 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 A0A1W2PQY0 241 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 MPTX1A8MV57 137 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 E5RJQ4 531 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ERI3O43414 337 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 ARSBP15848 533 aa7.08□□□□□ -1.28
LIMCH1-201ENST00000313860 C5AR1P21730 350 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms