RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 WDR89Q96FK6 387 aaPredicted RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 ABHD1Q96SE0 405 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 ZNF160Q9HCG1 818 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 CXorf51AA0A1B0GTR3 108 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 GPNMBQ14956 572 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 OR7A5Q15622 319 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 RNF128Q8TEB7 428 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 SEMA4CQ9C0C4 833 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 LYRM4Q9HD34 91 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 NDUFB6O95139 128 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 SSBP1Q04837 148 aaKnown RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 INSL4Q14641 139 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 RHOUQ7L0Q8 258 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 C7orf61Q8IZ16 206 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 OR4C16Q8NGL9 310 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 YIPF5Q969M3 257 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 CCNL2Q96S94 520 aaPredicted RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 SLC25A31Q9H0C2 315 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 TCEAL2Q9H3H9 227 aaPredicted RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 DKKL1Q9UK85 242 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 FBXL4Q9UKA2 621 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 PPIL1Q9Y3C6 166 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 PUS1Q9Y606 427 aaKnown RBP eCLIP17.72■□□□□ 0.43
USP48-201ENST00000308271 MFGE8Q08431 387 aaPredicted RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 DOC2BQ14184 412 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 LINC00615Q96LM1 132 aaPredicted RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 ZNF768Q9H5H4 540 aaKnown RBP17.72■□□□□ 0.43
USP48-201ENST00000308271 EMC9Q9Y3B6 208 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 ADAM18Q9Y3Q7 739 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 GON4LQ3T8J9 2241 aa17.72■□□□□ 0.43
USP48-201ENST00000308271 FITM1A5D6W6 292 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 PSMB6P28072 239 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 CX3CR1P49238 355 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 DCAF7P61962 342 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 GCDHQ92947 438 aaPredicted RBP17.71■□□□□ 0.43
USP48-201ENST00000308271 DEFB126Q9BYW3 111 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 IFT22Q9H7X7 185 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 COL16A1Q07092 1604 aaPredicted RBP17.71■□□□□ 0.43
USP48-201ENST00000308271 C9J4A7 227 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 CD3DP04234 171 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 UBE2KP61086 200 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 ARF1P84077 181 aaKnown RBP17.71■□□□□ 0.43
USP48-201ENST00000308271 HLXQ14774 488 aaPredicted RBP17.71■□□□□ 0.43
USP48-201ENST00000308271 SLC25A30Q5SVS4 291 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 SLC39A5Q6ZMH5 540 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 KCNRGQ8N5I3 272 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 DIO2Q92813 273 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 SLAMF9Q96A28 289 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 WDR34Q96EX3 536 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 NAA11Q9BSU3 229 aaPredicted RBP17.71■□□□□ 0.43
USP48-201ENST00000308271 DNMT3BQ9UBC3 853 aaKnown RBP17.71■□□□□ 0.43
USP48-201ENST00000308271 CYB5R1Q9UHQ9 305 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 TRAV36DV7A0A075B6V5 113 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 FAM221BA6H8Z2 402 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 CHRM2P08172 466 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 CLUP10909 449 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 GLYATL2Q8WU03 294 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 TMED6Q8WW62 240 aa17.71■□□□□ 0.43
USP48-201ENST00000308271 HIDE1A8MVS5 230 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 PYCARD-AS1I3L0S3 204 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 EIF2S3LQ2VIR3 472 aaKnown RBP17.71■□□□□ 0.42
USP48-201ENST00000308271 BAP18Q8IXM2 172 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 OR52B4Q8NGK2 314 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 C2CD4CQ8TF44 421 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 SPTSSAQ969W0 71 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 RRNAD1Q96FB5 475 aaKnown RBP17.71■□□□□ 0.42
USP48-201ENST00000308271 OR1F2PQ96R84 312 aa17.71■□□□□ 0.42
USP48-201ENST00000308271 EXOSC3Q9NQT5 275 aaKnown RBP17.71■□□□□ 0.42
USP48-201ENST00000308271 MRPS17Q9Y2R5 130 aaKnown RBP17.71■□□□□ 0.42
USP48-201ENST00000308271 ADAMTSL1Q8N6G6 1762 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 RFPL4AA6NLU0 287 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 RFPL4AL1F8VTS6 287 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 H3BML4 177 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 XRCC3O43542 346 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 IFNA10P01566 189 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 IFNA4P05014 189 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 ZNF250P15622 560 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 IAH1Q2TAA2 248 aaPredicted RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 FAM74A1Q5RGS3 127 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 ZNF362Q5T0B9 420 aaPredicted RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 PDSS1Q5T2R2 415 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 EEF1A1P5Q5VTE0 462 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 UQCC3Q6UW78 93 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 C5orf46Q6UWT4 87 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 MEX3BQ6ZN04 569 aaKnown RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 ZFP82Q8N141 532 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 TRAF4Q9BUZ4 470 aaPredicted RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 OR51B4Q9Y5P0 310 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 CSAG2Q9Y5P2 127 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 CCNOP22674 350 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 MAGEB1P43366 347 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 PXNP49023 591 aaPredicted RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 PMPCAQ10713 525 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 AGERQ15109 404 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 SLC38A6Q8IZM9 456 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 MRPL43Q8N983 215 aaKnown RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 OR5M1Q8NGP8 315 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 CGGBP1Q9UFW8 167 aaPredicted RBP17.7■□□□□ 0.42
USP48-201ENST00000308271 DEFB103AP81534 67 aa17.7■□□□□ 0.42
USP48-201ENST00000308271 NFATC4Q14934 902 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms