RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 RAB1CQ92928 201 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 PAIP1Q9H074 479 aaKnown RBP12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF696Q9H7X3 374 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 TCF7L2Q9NQB0 619 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 GLTPQ9NZD2 209 aa12.61□□□□□ -0.39
CCDC88B-201ENST00000301897 TRRAPQ9Y4A5 3859 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 TPD52L2O43399 206 aaKnown RBP12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 MGRN1O60291 552 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 CDC14BO60729 498 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 SNNO75324 88 aaPredicted RBP12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 DEAF1O75398 565 aaPredicted RBP12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 AVPP01185 164 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 LCKP06239 509 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 ADORA3P0DMS8 318 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 KITP10721 976 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 DRD4P21917 467 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 BIDP55957 195 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 MVKQ03426 396 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 PLP2Q04941 152 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC3A1Q07837 685 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 OR1Q1Q15612 314 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC36A2Q495M3 483 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 NRN1LQ496H8 165 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 CROCCP2Q86T23 111 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 RETREG3Q86VR2 466 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 CPEB3Q8NE35 698 aaKnown RBP12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 NFKBIDQ8NI38 313 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 TMEM54Q969K7 222 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF566Q969W8 418 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 ELMOD3Q96FG2 381 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 MOGAT1Q96PD6 335 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC6A7Q99884 636 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 ZNF747Q9BV97 191 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 RSPO3Q9BXY4 272 aaPredicted RBP12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 RNF121Q9H920 327 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 SAP30LQ9HAJ7 183 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 TMEM38BQ9NVV0 291 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 CORO2BQ9UQ03 480 aa12.6□□□□□ -0.39
CCDC88B-201ENST00000301897 IQCMA0A1B0GVH7 501 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 C11orf98E9PRG8 122 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 FMO6PO60774 539 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 SERPINB7O75635 380 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 SERPINI2O75830 405 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 CLPTM1O96005 669 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 VIMP08670 466 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 FAM157BP0CG42 384 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC6A2P23975 617 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 UCP2P55851 309 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 WDR4P57081 412 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 UBA52P62987 128 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 CDK6Q00534 326 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 ALKBH6Q3KRA9 238 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 AVPI1Q5T686 147 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 UNQ6126/PRO20091Q6UXV3 157 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 RBMS3Q6XE24 437 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 USP51Q70EK9 711 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC35D2Q76EJ3 337 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 SLC25A44Q96H78 314 aaPredicted RBP12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 CENPHQ9H3R5 247 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 ZMAT3Q9HA38 289 aaKnown RBP12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 WIPI2Q9Y4P8 454 aa12.59□□□□□ -0.39
CCDC88B-201ENST00000301897 PPIAL4EA0A075B759 164 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 PPIAL4CA0A0B4J2A2 164 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 PPIAL4DF5H284 164 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 TMPRSS2O15393 492 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 DHHO43323 396 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 KCNAB3O43448 404 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 PRSS23O95084 383 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 IGHV3-13P01766 116 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 PATE4P0C8F1 98 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 PPIAL4FP0DN26 164 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 ADRA2CP18825 462 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 CDH12P55289 794 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 ZP4Q12836 540 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF613Q6PF04 617 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 SLC16A14Q7RTX9 510 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 HDDC2Q7Z4H3 204 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 C1orf174Q8IYL3 243 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 ZDHHC22Q8N966 263 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 OR9I1Q8NGQ6 314 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 FGFBP3Q8TAT2 258 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 SH3GL3Q99963 347 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 TMEM38AQ9H6F2 299 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 C7orf69Q9H7B7 122 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 ESM1Q9NQ30 184 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 GMEB1Q9Y692 573 aa12.58□□□□□ -0.4
CCDC88B-201ENST00000301897 RNF13O43567 381 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 CHP2O43745 196 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 TPST1O60507 370 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 MFN2O95140 757 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 FSHBP01225 129 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 IGHG1P01857 330 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 HIST1H2ABP04908 130 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 HKR1P10072 659 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 HOXB9P17482 250 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 APLNRP35414 380 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF81P51508 661 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 ZNF84P51523 738 aa12.57□□□□□ -0.4
CCDC88B-201ENST00000301897 STX1BP61266 288 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms