RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DUSP19Q8WTR2 217 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 HAVCR1Q96D42 359 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 GAL3ST4Q96RP7 486 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 CACYBPQ9HB71 228 aaKnown RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 INPP5EQ9NRR6 644 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 RXFP3Q9NSD7 469 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 MRPL22Q9NWU5 206 aaKnown RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 OPN4Q9UHM6 478 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 DOCK7Q96N67 2140 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 CARNS1A5YM72 827 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 GSTZ1O43708 216 aaPredicted RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 ARL6IP5O75915 188 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 TACR3P29371 465 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 POU3F4P49335 361 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 AKR1C2P52895 323 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 HSF2Q03933 536 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 AKR1C1Q04828 323 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 ALG10Q5BKT4 473 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 OVCH1Q7RTY7 1134 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 ATG4DQ86TL0 474 aaPredicted RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 GVQW1Q8N7I0 195 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 BHLHE23Q8NDY6 225 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 OR5AK2Q8NH90 309 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 KLHL9Q9P2J3 617 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 MRPS18BQ9Y676 258 aaKnown RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 RALGAPA1Q6GYQ0 2036 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 TRAV18A0A075B6X5 111 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 SLC22A23A1A5C7 686 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 GLCEO94923 617 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 AGR2O95994 175 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 CTLA4P16410 223 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 HNRNPA2B1P22626 353 aaKnown RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 PSMA6P60900 246 aaKnown RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 SKP2Q13309 424 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 HLXQ14774 488 aaPredicted RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 ATXN7L3Q14CW9 347 aaPredicted RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 KLHL26Q53HC5 615 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 MCATQ8IVS2 390 aaKnown RBP9.66□□□□□ -0.86
USP28-201ENST00000003302 TPSD1Q9BZJ3 242 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 LMAN2LQ9H0V9 348 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 TAS2R5Q9NYW4 299 aa9.66□□□□□ -0.86
USP28-201ENST00000003302 DCDC2BA2VCK2 349 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 GOSR2O14653 212 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 CTAG2O75638 210 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ACTC1P68032 377 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ACTA1P68133 377 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 FZD2Q14332 565 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 GRAMD2AQ8IUY3 354 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 PTPMT1Q8WUK0 201 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 MRGPRFQ96AM1 343 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 SEC22AQ96IW7 307 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 LMF2Q9BU23 707 aaKnown RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 KRCC1Q9NPI7 259 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 MKKSQ9NPJ1 570 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 PNO1Q9NRX1 252 aaKnown RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 STEAP1Q9UHE8 339 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 CYP8B1Q9UNU6 501 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZNF337Q9Y3M9 751 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 IFNGP01579 166 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ASAH2BP0C7U1 165 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 CENPAP49450 140 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 PPM1FP49593 454 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 RAB38P57729 211 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 TAS2R43P59537 309 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 INSM1Q01101 510 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 DYRK1AQ13627 763 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ALKBH1Q13686 389 aaKnown RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 CLLU1Q5K131 121 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 FNDC7Q5VTL7 733 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZNF626Q68DY1 528 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 DPY19L2P2Q6ZN68 376 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 TMPPEQ6ZT21 453 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 LINC00346Q8IVM7 164 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 FCAMRQ8WWV6 532 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 NR4A3Q92570 626 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 TTC9Q92623 222 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZNF75AQ96N20 296 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ADAT1Q9BUB4 502 aaKnown RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 SDHAF2Q9NX18 166 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 UBQLN2Q9UHD9 624 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZNF407Q9C0G0 2248 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 A0A0J9YY10 115 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 OR5K3A6NET4 321 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ATF4P18848 351 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 ALOX5APP20292 161 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 SORDQ00796 357 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZNF117Q03924 483 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZP2Q05996 745 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 ZNF141Q15928 474 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 LY6G6FQ5SQ64 297 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 TMED4Q7Z7H5 227 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 THAP3Q8WTV1 239 aaPredicted RBP9.65□□□□□ -0.86
USP28-201ENST00000003302 CACNA1EQ15878 2313 aa9.65□□□□□ -0.86
USP28-201ENST00000003302 TRAV14DV4A0A0A6YYC5 116 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 METTL12A8MUP2 240 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 C2orf74A8MZ97 194 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 ZNF28P17035 718 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 NKPD1Q17RQ9 610 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 OLFML2AQ68BL7 652 aa9.65□□□□□ -0.87
USP28-201ENST00000003302 LUZP2Q86TE4 346 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms