RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TOMM34Q15785 309 aaPredicted RBP20.64■□□□□ 0.89
VPS53-211ENST00000571805 HIST3H2AQ7L7L0 130 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 PRSS35Q8N3Z0 413 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 CEP76Q8TAP6 659 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 NSMAFQ92636 917 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 HIST1H2ACQ93077 130 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 TAS2R5Q9NYW4 299 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 FKBP7Q9Y680 259 aa20.64■□□□□ 0.89
VPS53-211ENST00000571805 ALPK2Q86TB3 2170 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 TMEM150CB9EJG8 249 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 ZNF254O75437 659 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 SLC22A5O76082 557 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 SLC6A8P48029 635 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 TAS2R20P59543 309 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 C1QL3Q5VWW1 255 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 DNM1P46Q6ZS02 220 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 TTLL10Q6ZVT0 673 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 CUTCQ9NTM9 273 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 MRTO4Q9UKD2 239 aaKnown RBP20.63■□□□□ 0.89
VPS53-211ENST00000571805 A0A1B0GUH1 482 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 LEUTXA8MZ59 168 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 GMFGO60234 142 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 TMIGD3P0DMS9 266 aaPredicted RBP20.63■□□□□ 0.89
VPS53-211ENST00000571805 EFNA3P52797 238 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 PLA2G7Q13093 441 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 COL28A1Q2UY09 1125 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 NLRC3Q7RTR2 1065 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 PM20D2Q8IYS1 436 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 FAM109AQ8N4B1 249 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 OR51A4Q8NGJ6 313 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 THEM6Q8WUY1 208 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 AMELYQ99218 206 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 NUDT9Q9BW91 350 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 NRSN2Q9GZP1 204 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 NPDC1Q9NQX5 325 aaPredicted RBP20.63■□□□□ 0.89
VPS53-211ENST00000571805 FBXL3Q9UKT7 428 aa20.63■□□□□ 0.89
VPS53-211ENST00000571805 ZNF432O94892 652 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 WISP1O95388 367 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 IKZF1Q13422 519 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 NKAIN2Q5VXU1 208 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 LRRN1Q6UXK5 716 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 KANSL1Q7Z3B3 1105 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 TMPRSS12Q86WS5 348 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 DEFB119Q8N690 84 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 INTS14Q96SY0 518 aa20.62■□□□□ 0.89
VPS53-211ENST00000571805 ING1Q9UK53 422 aaPredicted RBP20.62■□□□□ 0.89
VPS53-211ENST00000571805 IGHV1OR15-9A0A0B4J2B8 117 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 A0A1W2PR77 199 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 ACOT7O00154 380 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 ARPC1BO15143 372 aaKnown RBP20.61■□□□□ 0.89
VPS53-211ENST00000571805 LDOC1O95751 146 aaPredicted RBP20.61■□□□□ 0.89
VPS53-211ENST00000571805 MAS1P04201 325 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 METTL11BQ5VVY1 283 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 ZNF676Q8N7Q3 588 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 PIGKQ92643 395 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 GAL3ST4Q96RP7 486 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 TPSD1Q9BZJ3 242 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 METTL17Q9H7H0 456 aaPredicted RBP20.61■□□□□ 0.89
VPS53-211ENST00000571805 NOX3Q9HBY0 568 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 TAS2R10Q9NYW0 307 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 EPHA6Q9UF33 1036 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 TMEM14AQ9Y6G1 99 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 CDC14CA4D256 554 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 TMEM212A6NML5 194 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 HCRTR2O43614 444 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 DCTDP32321 178 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 KIR3DL2P43630 455 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 MARCH3Q86UD3 253 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 ZNF417Q8TAU3 575 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 TMEM106AQ96A25 262 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 DNAJA3Q96EY1 480 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 OR1F2PQ96R84 312 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 COMMD4Q9H0A8 199 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 DIABLOQ9NR28 239 aa20.61■□□□□ 0.89
VPS53-211ENST00000571805 H0YC42 278 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 GLSO94925 669 aaPredicted RBP20.6■□□□□ 0.89
VPS53-211ENST00000571805 CXCR1P25024 350 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 RAD52P43351 418 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 LINC00303Q3SY05 128 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 ESCO2Q56NI9 601 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 FAAP20Q6NZ36 180 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 LRRC69Q6ZNQ3 347 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 SYT13Q7L8C5 426 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 OR2T35Q8NGX2 323 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 OTOSQ8NHW6 89 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 ANGPTL6Q8NI99 470 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 GPR148Q8TDV2 347 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 MCHR2Q969V1 340 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 NXPE2Q96DL1 559 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 UTP23Q9BRU9 249 aaKnown RBP20.6■□□□□ 0.89
VPS53-211ENST00000571805 ULBP3Q9BZM4 244 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 KCNG2Q9UJ96 466 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 ANXA2P2A6NMY6 339 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 TPPPO94811 219 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 ANXA2P07355 339 aaKnown RBP20.6■□□□□ 0.89
VPS53-211ENST00000571805 ITPKBP27987 946 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 CBFBQ13951 182 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 EBPQ15125 230 aaKnown RBP20.6■□□□□ 0.89
VPS53-211ENST00000571805 POMZP3Q6PJE2 187 aa20.6■□□□□ 0.89
VPS53-211ENST00000571805 GLDNQ6ZMI3 551 aaPredicted RBP20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms