RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 GABRPO00591 440 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 DVL2O14641 736 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 PRAMEF4O60810 478 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ADAP00813 363 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 CSTAP01040 98 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 FGBP02675 491 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 HOXB9P17482 250 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 OR1E2P47887 323 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 RFX3P48380 749 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 WNT3P56703 355 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SLC37A1P57057 533 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 RHOAP61586 193 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ACSM1Q08AH1 577 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 TAF13Q15543 124 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 NDUFA9Q16795 377 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 PRAMEF9Q5VWM5 478 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ZNF626Q68DY1 528 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 OR2T2Q6IF00 324 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 SERPINA9Q86WD7 417 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 TMED6Q8WW62 240 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 TAAR8Q969N4 342 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 MRGPRX3Q96LB0 322 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 EPYCQ99645 322 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 ATG10Q9H0Y0 220 aa9.93□□□□□ -0.82
CLK3-226ENST00000569406 KRCC1Q9NPI7 259 aaPredicted RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 RBM7Q9Y580 266 aaKnown RBP9.93□□□□□ -0.82
CLK3-226ENST00000569406 SLC25A14O95258 325 aaPredicted RBP9.92□□□□□ -0.82
CLK3-226ENST00000569406 B3GALT4O96024 378 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 COX7A2P14406 83 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACRV1P26436 265 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 GABRA5P31644 462 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 LSM11P83369 360 aaKnown RBP eCLIP9.92□□□□□ -0.82
CLK3-226ENST00000569406 PTSQ03393 145 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 TEAD2Q15562 447 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 DCST1Q5T197 706 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ZNF697Q5TEC3 545 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 PRAMEF8Q5VWM4 474 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 PRAMEF7Q5VXH5 474 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ATG9BQ674R7 924 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 TMEM220Q6QAJ8 160 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 MRGPRDQ8TDS7 321 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 XAGE5Q8WWM1 108 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 LCN9Q8WX39 176 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 TMEM159Q96B96 161 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 LYSMD1Q96S90 227 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 OR2AG1Q9H205 316 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 MMP26Q9NRE1 261 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 CCL26Q9Y258 94 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 DYRK1BQ9Y463 629 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 TBC1D3BA6NDS4 549 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 PGRMC2O15173 223 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 GLCEO94923 617 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 C1QCP02747 245 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 HLA-DPB1P04440 258 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 PIPP12273 146 aaPredicted RBP9.92□□□□□ -0.82
CLK3-226ENST00000569406 IL1RNP18510 177 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 MAPK9P45984 424 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 CRISP1P54107 249 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACTBP60709 375 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACTA2P62736 377 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACTG1P63261 375 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACTG2P63267 376 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACTC1P68032 377 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 ACTA1P68133 377 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 C4orf17Q53FE4 359 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 DNLZQ5SXM8 178 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 LRIF1Q5T3J3 769 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 TBC1D3GQ6DHY5 549 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 THEM6Q8WUY1 208 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 CORO2AQ92828 525 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 DEFB118Q96PH6 123 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 FAIM2Q9BWQ8 316 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 CSTL1Q9H114 145 aa9.92□□□□□ -0.82
CLK3-226ENST00000569406 M0QZ24 198 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 GZMBP10144 247 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 CTSAP10619 480 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 SULT1A1P50225 295 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 HSD11B2P80365 405 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 ATP6V1FQ16864 119 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 JMJD6Q6NYC1 403 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 LILRA6Q6PI73 481 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 DHRS11Q6UWP2 260 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 OR4E2Q8NGC2 313 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 JSRP1Q96MG2 331 aaPredicted RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 SMG9Q9H0W8 520 aaKnown RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 TMEM27Q9HBJ8 222 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 HRASLSQ9HDD0 168 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 PADI1Q9ULC6 663 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 MYO9BQ13459 2157 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 A0A1W2PN81 502 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 FFAR2O15552 330 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 BCL2L11O43521 198 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 PLRG1O43660 514 aaKnown RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 CDC14BO60729 498 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 GGCTO75223 188 aaKnown RBP9.91□□□□□ -0.82
CLK3-226ENST00000569406 CHRNA7P36544 502 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 TNFSF10P50591 281 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 CHRFAM7AQ494W8 412 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 C1orf122Q6ZSJ8 110 aa9.91□□□□□ -0.82
CLK3-226ENST00000569406 GID4Q8IVV7 300 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms