RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ROR2Q01974 943 aaKnown RBP8.6□□□□□ -1.03
CLK3-208ENST00000562626 GABRA6Q16445 453 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 CEACAM16Q2WEN9 425 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 RFX4Q33E94 735 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 CLEC12AQ5QGZ9 265 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 FAHD1Q6P587 224 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 SMARCD3Q6STE5 483 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 BEND4Q6ZU67 534 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 STK32CQ86UX6 486 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 CDK20Q8IZL9 346 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 ZNF295-AS1Q8N0V1 137 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 IQCF1Q8N6M8 205 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 SYT14Q8NB59 555 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 OR6X1Q8NH79 312 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 OR5K1Q8NHB7 308 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 S100PBPQ96BU1 408 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 ZC3HAV1LQ96H79 300 aaKnown RBP8.6□□□□□ -1.03
CLK3-208ENST00000562626 GPX7Q96SL4 187 aaPredicted RBP8.6□□□□□ -1.03
CLK3-208ENST00000562626 KCNK17Q96T54 332 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 POLDIP3Q9BY77 421 aaKnown RBP8.6□□□□□ -1.03
CLK3-208ENST00000562626 LINC00470Q9BZP3 86 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 NRIP3Q9NQ35 241 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 CRIM1Q9NZV1 1036 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 IER3IP1Q9Y5U9 82 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 CDH10Q9Y6N8 788 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 PLCE1Q9P212 2302 aa8.6□□□□□ -1.03
CLK3-208ENST00000562626 ROS1P08922 2347 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ARRDC5A6NEK1 342 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 NPIPB13A6NJU9 1138 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 NPIPB4C9JG80 1138 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 SOCS2O14508 198 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 SLC43A1O75387 559 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 SLC2A10O95528 541 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 BCL10O95999 233 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ACADSP16219 412 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 CDH2P19022 906 aaPredicted RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 PSMB1P20618 241 aaKnown RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 EPHA2P29317 976 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 RPL4P36578 427 aaKnown RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 ACVR1BP36896 505 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 CDKN2AP42771 156 aaKnown RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 CSNK1A1P48729 337 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 TUBA1BP68363 451 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 TUBA4AP68366 448 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ARF1P84077 181 aaKnown RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 ITGADQ13349 1161 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ETFDHQ16134 617 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 HIST3H3Q16695 136 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ANKDD1AQ495B1 522 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 HIKESHIQ53FT3 197 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ZNF362Q5T0B9 420 aaPredicted RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 OTPQ5XKR4 325 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 RASSF6Q6ZTQ3 369 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 TUBA1AQ71U36 451 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 BHLHA15Q7RTS1 189 aaPredicted RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 LINC00471Q8N535 108 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 WDR31Q8NA23 367 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ICA1LQ8NDH6 482 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 NOXO1Q8NFA2 376 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 OR1K1Q8NGR3 316 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 SLC25A44Q96H78 314 aaPredicted RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 ACTR6Q9GZN1 396 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 GABARAPL1Q9H0R8 117 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 FN3KQ9H479 309 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 YY1AP1Q9H869 796 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 NOX3Q9HBY0 568 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 CRLF2Q9HC73 371 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 PARPBPQ9NWS1 579 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ASB6Q9NWX5 421 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ELOVL5Q9NYP7 299 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 IL20Q9NYY1 176 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 GLTPQ9NZD2 209 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 ZNF224Q9NZL3 707 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 NPAP1Q9NZP6 1156 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 UPB1Q9UBR1 384 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 TMEFF2Q9UIK5 374 aaPredicted RBP8.59□□□□□ -1.03
CLK3-208ENST00000562626 OAZ3Q9UMX2 235 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 MGAT4BQ9UQ53 548 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 UGT2A1Q9Y4X1 527 aa8.59□□□□□ -1.03
CLK3-208ENST00000562626 AKAP6Q13023 2319 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 A0A096LPE4 126 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 A0A1W2PPR1 153 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 A0A1W2PPZ6 126 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 ZNF726A6NNF4 738 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 C16orf97H3BN30 126 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 RPL36A-HNRNPH2H7BZ11 118 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 DCTN6O00399 190 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 BHLHE40O14503 412 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 CNOT4O95628 575 aaKnown RBP8.58□□□□□ -1.04
CLK3-208ENST00000562626 GPANK1O95872 356 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 SCG5P05408 212 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 QDPRP09417 244 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 PRF1P14222 555 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 ZNF23P17027 643 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 HOXB6P17509 224 aaKnown RBP8.58□□□□□ -1.04
CLK3-208ENST00000562626 LOXP28300 417 aaPredicted RBP8.58□□□□□ -1.04
CLK3-208ENST00000562626 MPGP29372 298 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 IFNGR2P38484 337 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 PRPS1P60891 318 aa8.58□□□□□ -1.04
CLK3-208ENST00000562626 ELF3P78545 371 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms