RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NHLRC1Q6VVB1 395 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 SSX8Q7RTT4 187 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ADCK1Q86TW2 530 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 KIF18BQ86Y91 864 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 LURAP1LQ8IV03 231 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 LNX2Q8N448 690 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 FAM26EQ8N5C1 309 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 CLEC18CQ8NCF0 446 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 NAXEQ8NCW5 288 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 TXNDC15Q96J42 360 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 PLEKHA8Q96JA3 519 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ZNF385AQ96PM9 386 aaKnown RBP8.18□□□□□ -1.1
LDLR-210ENST00000559340 SLC38A2Q96QD8 506 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 OR2M2Q96R28 347 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 ENKD1Q9H0I2 346 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 EGLN3Q9H6Z9 239 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 MED29Q9NX70 200 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 REV1Q9UBZ9 1251 aa8.18□□□□□ -1.1
LDLR-210ENST00000559340 MAGED1Q9Y5V3 778 aaPredicted RBP8.18□□□□□ -1.1
LDLR-210ENST00000559340 UBR5O95071 2799 aaPredicted RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 RIIAD1A6NNX1 92 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 A8MXE2 369 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 EEF1E1-BLOC1S5C9J1V9 151 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ARHGEF9O43307 516 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 EEF1E1O43324 174 aaKnown RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 TRMUO75648 421 aaKnown RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 SOX14O95416 240 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ATP6V1G2O95670 118 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 PPP1R3DO95685 299 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 CGAP01215 116 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ZNF3P17036 446 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 PAICSP22234 425 aaKnown RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 PAX7P23759 505 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 CRABP1P29762 137 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 SELENOPP49908 381 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ZNF84P51523 738 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 SH3BGRP55822 239 aaPredicted RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 CDK5Q00535 292 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 CD47Q08722 323 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 NPRL3Q12980 569 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 CAMK2DQ13557 499 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 KRR1Q13601 381 aaKnown RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 GINS1Q14691 196 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 FBXL19-AS1Q494R0 122 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 CLEC12AQ5QGZ9 265 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ARMC4Q5T2S8 1044 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 OGFRL1Q5TC84 451 aaPredicted RBP8.17□□□□□ -1.1
LDLR-210ENST00000559340 DNM1P34Q6PK57 102 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 TFAP2EQ6VUC0 442 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 THSD4Q6ZMP0 1018 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 Q6ZT83 130 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 FAM122BQ7Z309 247 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 IGFN1Q86VF2 1251 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 C20orf196Q8IYI0 205 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ZNF610Q8N9Z0 462 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ZNF555Q8NEP9 628 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 SSC4DQ8WTU2 575 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 TMEM54Q969K7 222 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 Q96M85 177 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 TSPAN32Q96QS1 320 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 EMC6Q9BV81 110 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 ULBP2Q9BZM5 246 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 RIBC2Q9H4K1 309 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 SLC25A19Q9HC21 320 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 GLTPQ9NZD2 209 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 JKAMPQ9P055 326 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 DOPEY2Q9Y3R5 2298 aa8.17□□□□□ -1.1
LDLR-210ENST00000559340 TEX13CA0A0J9YWL9 993 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 CIB4A0PJX0 185 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 PRSS37A4D1T9 235 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 H0YJX3 145 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 RPL36A-HNRNPH2H7BZ11 118 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 BHLHE40O14503 412 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 SOCS2O14508 198 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 ZG16O60844 167 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 TP53P04637 393 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 HOXB1P14653 301 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 MPGP29372 298 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 CD79BP40259 229 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 CENPAP49450 140 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 FXYD6P3P58550 94 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 CDC42P60953 191 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.16□□□□□ -1.1
LDLR-210ENST00000559340 LGALS3BPQ08380 585 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 FAPQ12884 760 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 MELKQ14680 651 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 PTGES3Q15185 160 aaKnown RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 SNAPC1Q16533 368 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 LRRC36Q1X8D7 754 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 PGGHGQ32M88 737 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 TTC23Q5W5X9 447 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 CARD17Q5XLA6 110 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 LPCAT4Q643R3 524 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 OR7E24Q6IFN5 339 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 CCDC36Q8IYA8 594 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 TMEM123Q8N131 208 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 DEPDC4Q8N2C3 294 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 GALNT4Q8N4A0 578 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 NOXO1Q8NFA2 376 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 STEAP2Q8NFT2 490 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms