RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KIR2DL2P43627 348 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 MLLT10P55197 1068 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 CDK5R2Q13319 367 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 ITGADQ13349 1161 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 KRR1Q13601 381 aaKnown RBP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 C1DQ13901 141 aaKnown RBP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 SNAPC1Q16533 368 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 NRN1LQ496H8 165 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 SLC35D3Q5M8T2 416 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 CLEC12AQ5QGZ9 265 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 C10orf128Q5T292 105 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 C6orf52Q5T4I8 152 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 C1QTNF12Q5T7M4 302 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 TMEM211Q6ICI0 200 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 LAIR2Q6ISS4 152 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 MYO7BQ6PIF6 2116 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 B3GNT6Q6ZMB0 384 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 FOXL2NBQ6ZUU3 175 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 PTCHD4Q6ZW05 846 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 FAM214BQ7L5A3 538 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF627Q7L945 461 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 IGFN1Q86VF2 1251 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 WDFY1Q8IWB7 410 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 TUSC5Q8IXB3 177 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 C20orf196Q8IYI0 205 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 C9orf106Q8NAJ2 232 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 SLC37A3Q8NCC5 494 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 OR5M9Q8NGP3 310 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 APH1BQ8WW43 257 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 CYGBQ8WWM9 190 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 HDAC2Q92769 488 aaKnown RBP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 DNAJA3Q96EY1 480 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 OR2M2Q96R28 347 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 TRIB1Q96RU8 372 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 PRRG4Q9BZD6 226 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 RACGAP1Q9H0H5 632 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 MARCH7Q9H992 704 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 HINT3Q9NQE9 182 aaKnown RBP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 MED29Q9NX70 200 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 TVP23BQ9NYZ1 205 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF629Q9UEG4 869 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-211ENST00000552338 IL20RAQ9UHF4 553 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 RNF6Q9Y252 685 aa8.49□□□□□ -1.05
LIMA1-211ENST00000552338 KMT2BQ9UMN6 2715 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-211ENST00000552338 OR6C68A6NDL8 312 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 TNFSF13O75888 250 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 IL2RAP01589 272 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 IGHG1P01857 330 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 CCDC159P0C7I6 412 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 GLI4P10075 376 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 CD8BP10966 210 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF3P17036 446 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 NOS3P29474 1203 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 CRABP1P29762 137 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 SLC15A1P46059 708 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 OR3A2P47893 321 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 BLVRAP53004 296 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 BIDP55957 195 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 CLDN17P56750 224 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 RUNX1T1Q06455 604 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 CD47Q08722 323 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 MED21Q13503 144 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 CRMP1Q14194 572 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 LINC01590Q5TEZ4 76 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF585AQ6P3V2 769 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 SLC25A47Q6Q0C1 308 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 RPTNQ6XPR3 784 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 GPAT4Q86UL3 456 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 EGFL6Q8IUX8 553 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 IQCF1Q8N6M8 205 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 TCEANCQ8N8B7 351 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 POMGNT2Q8NAT1 580 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 NOXO1Q8NFA2 376 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 OR52E2Q8NGJ4 325 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 OR6K3Q8NGY3 331 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 OR4K13Q8NH42 304 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 FAM81AQ8TBF8 368 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 UBE2FQ969M7 185 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 RASD2Q96D21 266 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 Q96MT0 163 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 RBP7Q96R05 134 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 NMNAT3Q96T66 252 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 GLTPQ9NZD2 209 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 LRCH1Q9Y2L9 728 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 NOSIPQ9Y314 301 aaKnown RBP8.48□□□□□ -1.05
LIMA1-211ENST00000552338 BOD1L1Q8NFC6 3051 aa8.48□□□□□ -1.05
LIMA1-211ENST00000552338 IGLV1-36A0A0B4J1U3 117 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF726A6NNF4 738 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 RIIAD1A6NNX1 92 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 HSPB2A8KAH6 182 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 PRR23D1E9PI22 279 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 XKRYO14609 159 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 ZNHIT1O43257 154 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 ARHGEF9O43307 516 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 TLX2O43763 284 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SLC43A1O75387 559 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 MRPL33O75394 65 aaKnown RBP8.47□□□□□ -1.05
LIMA1-211ENST00000552338 SLC2A10O95528 541 aa8.47□□□□□ -1.05
LIMA1-211ENST00000552338 CLIC3O95833 236 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms