RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 FAM69AQ5T7M9 428 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 STPG1Q5TH74 334 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 ZNF519Q8TB69 540 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 CCDC74AQ96AQ1 378 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 TRAF4Q9BUZ4 470 aaPredicted RBP16.28■□□□□ 0.2
VIM-209ENST00000544301 OR5V1Q9UGF6 321 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 ING1Q9UK53 422 aaPredicted RBP16.28■□□□□ 0.2
VIM-209ENST00000544301 PCNX3Q9H6A9 2034 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 IGHV3-20A0A0C4DH32 117 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 A8MVM7 634 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 SMLR1H3BR10 107 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 ADAM10O14672 748 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 ADRA2CP18825 462 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 GDNFP39905 211 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 CCR6P51684 374 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 RPL27P61353 136 aaKnown RBP16.28■□□□□ 0.2
VIM-209ENST00000544301 DMWDQ09019 674 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 TNK1Q13470 666 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 DYRK1AQ13627 763 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 ACKR1Q16570 336 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 C1orf140Q5VVS0 124 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 LINGO2Q7L985 606 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 LRRTM1Q86UE6 522 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 OTOSQ8NHW6 89 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 DUSP19Q8WTR2 217 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 NSMAFQ92636 917 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 AMELYQ99218 206 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 SLCO1C1Q9NYB5 712 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 COPZ2Q9P299 210 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 WNT16Q9UBV4 365 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 KCNG2Q9UJ96 466 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 B9D1Q9UPM9 204 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 ADAMTS20P59510 1910 aa16.28■□□□□ 0.2
VIM-209ENST00000544301 PRSS37A4D1T9 235 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 PHYHO14832 338 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 DXOO77932 396 aaKnown RBP16.27■□□□□ 0.2
VIM-209ENST00000544301 MT-ND4P03905 459 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 SNTB2Q13425 540 aaKnown RBP16.27■□□□□ 0.2
VIM-209ENST00000544301 SHBQ15464 509 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 FCN2Q15485 313 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 LRRC69Q6ZNQ3 347 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 GRINAQ7Z429 371 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 PRSS35Q8N3Z0 413 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 GTPBP2Q9BX10 602 aaKnown RBP16.27■□□□□ 0.2
VIM-209ENST00000544301 MED28Q9H204 178 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 TAS2R10Q9NYW0 307 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 FKBP7Q9Y680 259 aa16.27■□□□□ 0.2
VIM-209ENST00000544301 TRBV5-7A0A0A0MS05 114 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 TMEM212A6NML5 194 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 ZNF254O75437 659 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 ZNF432O94892 652 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 CALCBP10092 127 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 RNF4P78317 190 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 WDR45BQ5MNZ6 344 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 SLC22A10Q63ZE4 541 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 PWWP2BQ6NUJ5 590 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 C16orf47Q6ZP98 133 aaPredicted RBP16.27■□□□□ 0.19
VIM-209ENST00000544301 TMPRSS9Q7Z410 1059 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 SERPINA12Q8IW75 414 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 ZNF676Q8N7Q3 588 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 OR10AC1Q8NH08 325 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 STT3BQ8TCJ2 826 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 MRI1Q9BV20 369 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 TGIF2Q9GZN2 237 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 COMMD4Q9H0A8 199 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 DUSP15Q9H1R2 295 aaPredicted RBP16.27■□□□□ 0.19
VIM-209ENST00000544301 PLEKHA1Q9HB21 404 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 VCANP13611 3396 aa16.27■□□□□ 0.19
VIM-209ENST00000544301 SPEGQ15772 3267 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 SDK1Q7Z5N4 2213 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 ALPK2Q86TB3 2170 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 HSPB2A8KAH6 182 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 HSPB2Q16082 182 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 OTPQ5XKR4 325 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 FAM205BPQ63HN1 556 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 KANSL1Q7Z3B3 1105 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 LILRB4Q8NHJ6 448 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 SYNPRQ8TBG9 265 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 GCDHQ92947 438 aaPredicted RBP16.26■□□□□ 0.19
VIM-209ENST00000544301 FOXN4Q96NZ1 517 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 OR11A1Q9GZK7 315 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 TXNIPQ9H3M7 391 aa16.26■□□□□ 0.19
VIM-209ENST00000544301 VSX1Q9NZR4 365 aaPredicted RBP16.26■□□□□ 0.19
VIM-209ENST00000544301 ZNF593O00488 134 aaPredicted RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 PLPP3O14495 311 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 HLA-DQA2P01906 255 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 KIR3DL2P43630 455 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 PTH2RP49190 550 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 INSM1Q01101 510 aaPredicted RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 COL28A1Q2UY09 1125 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 RHBDD2Q6NTF9 364 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 BTN2A1Q7KYR7 527 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 PLCZ1Q86YW0 608 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 DND1Q8IYX4 353 aaKnown RBP16.25■□□□□ 0.19
VIM-209ENST00000544301 OR51A4Q8NGJ6 313 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 OR52I2Q8NH67 350 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 STK35Q8TDR2 534 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 GPR148Q8TDV2 347 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 RELTQ969Z4 430 aa16.25■□□□□ 0.19
VIM-209ENST00000544301 S100A16Q96FQ6 103 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms