RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ZNF503-AS2A6NEH8 195 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 CPSF4LA6NMK7 179 aaKnown RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 M0QX08 132 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 M0R233 179 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 PHF1O43189 567 aaPredicted RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 RNF13O43567 381 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 SYNGR3O43761 229 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 TPST2O60704 377 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 FARS2O95363 451 aaKnown RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 OPN1SWP03999 348 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 IFNGR1P15260 489 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 CD247P20963 164 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 PTDSS1P48651 473 aaKnown RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 BIDP55957 195 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 CYLC2Q14093 348 aaPredicted RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 ZNF74Q16587 644 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 DUSP7Q16829 419 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 PHYHD1Q5SRE7 291 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 LINC00114Q6XXX2 140 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 SLC35D2Q76EJ3 337 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 DPPA2Q7Z7J5 298 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 ZNF786Q8N393 782 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 VANGL1Q8TAA9 524 aaPredicted RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 HPS1Q92902 700 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 ZNF566Q969W8 418 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 MSI2Q96DH6 328 aaKnown RBP11.34□□□□□ -0.59
RTN3-207ENST00000536011 TXNDC15Q96J42 360 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 PCDHAC1Q9H158 963 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 MS4A5Q9H3V2 200 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 ZNF385DQ9H6B1 395 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 CHODLQ9H9P2 273 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 NPHS2Q9NP85 383 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 SLC7A7Q9UM01 511 aa11.34□□□□□ -0.59
RTN3-207ENST00000536011 A0A0G2JND7 137 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 LRRN3E7EW58 273 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 C11orf98E9PRG8 122 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 C3orf80F5H4A9 247 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 STAMBPO95630 424 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 CH25HO95992 272 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 ADRA2AP08913 450 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 OR8G3PP0DMU2 310 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 UMPSP11172 480 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 ZNF14P17017 642 aaPredicted RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 IGFBP5P24593 272 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 GLRXP35754 106 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 GIPRP48546 466 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 RAB1AP62820 205 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 PIGFQ07326 219 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 ZP4Q12836 540 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 FAM120AOSQ5T036 256 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 NANOGNBQ7Z5D8 188 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 RETREG3Q86VR2 466 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 CDK20Q8IZL9 346 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 GPR32P1Q8NGA4 272 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 UBASH3BQ8TF42 649 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 MRPL24Q96A35 216 aaKnown RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 THOC1Q96FV9 657 aaKnown RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 SLC25A44Q96H78 314 aaPredicted RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 WFDC6Q9BQY6 131 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 POLR2J2Q9GZM3 115 aaKnown RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 POLR2J3Q9H1A7 115 aaKnown RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 C1orf198Q9H425 327 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 GLTPQ9NZD2 209 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 SLC7A8Q9UHI5 535 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 GPR160Q9UJ42 338 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 BAG5Q9UL15 447 aa11.33□□□□□ -0.6
RTN3-207ENST00000536011 ZNF346Q9UL40 294 aaKnown RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 YLPM1P49750 1951 aaKnown RBP11.33□□□□□ -0.6
RTN3-207ENST00000536011 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.33□□□□□ -0.61e-8■■■■□ 24
RTN3-207ENST00000536011 SLC22A23A1A5C7 686 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 SH3PXD2BA1X283 911 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 KPNA4O00629 521 aaPredicted RBP11.32□□□□□ -0.6
RTN3-207ENST00000536011 EDF1O60869 148 aaKnown RBP11.32□□□□□ -0.6
RTN3-207ENST00000536011 TGFAP01135 160 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 PTHP01270 115 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 IFNA14P01570 189 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 IGHG1P01857 330 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 TACSTD2P09758 323 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 ZNF35P13682 527 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 PCMT1P22061 227 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 APEX1P27695 318 aaKnown RBP11.32□□□□□ -0.6
RTN3-207ENST00000536011 SELENOVP59797 346 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 SELPLGQ14242 412 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 NPTX1Q15818 432 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 VMACQ2NL98 169 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 NRN1LQ496H8 165 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 TMEM53Q6P2H8 277 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 NHLRC1Q6VVB1 395 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 CCDC80Q76M96 950 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 SLC22A24Q8N4F4 322 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 OR10A6Q8NH74 314 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 TMEM54Q969K7 222 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 TAMM41Q96BW9 452 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 ZNF426Q9BUY5 554 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 STX18Q9P2W9 335 aaKnown RBP11.32□□□□□ -0.6
RTN3-207ENST00000536011 REV1Q9UBZ9 1251 aa11.32□□□□□ -0.6
RTN3-207ENST00000536011 A0A1W2PRG6 482 aa11.31□□□□□ -0.6
RTN3-207ENST00000536011 TMEM129A0AVI4 362 aa11.31□□□□□ -0.6
RTN3-207ENST00000536011 BBIP1A8MTZ0 92 aa11.31□□□□□ -0.6
RTN3-207ENST00000536011 CENPBD1B2RD01 187 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms