RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 THAP6Q8TBB0 222 aa6□□□□□ -1.45
USP28-202ENST00000535607 SLC22A8Q8TCC7 542 aa6□□□□□ -1.45
USP28-202ENST00000535607 THEM6Q8WUY1 208 aa6□□□□□ -1.45
USP28-202ENST00000535607 PCNPQ8WW12 178 aaKnown RBP6□□□□□ -1.45
USP28-202ENST00000535607 SLC5A11Q8WWX8 675 aa6□□□□□ -1.45
USP28-202ENST00000535607 ARL11Q969Q4 196 aa6□□□□□ -1.45
USP28-202ENST00000535607 OTUB2Q96DC9 234 aa6□□□□□ -1.45
USP28-202ENST00000535607 PCBD2Q9H0N5 130 aa6□□□□□ -1.45
USP28-202ENST00000535607 CXorf36Q9H7Y0 433 aa6□□□□□ -1.45
USP28-202ENST00000535607 DDX31Q9H8H2 851 aaKnown RBP6□□□□□ -1.45
USP28-202ENST00000535607 NRIP3Q9NQ35 241 aa6□□□□□ -1.45
USP28-202ENST00000535607 SPHK1Q9NYA1 384 aa6□□□□□ -1.45
USP28-202ENST00000535607 COA4Q9NYJ1 87 aa6□□□□□ -1.45
USP28-202ENST00000535607 RASL12Q9NYN1 266 aa6□□□□□ -1.45
USP28-202ENST00000535607 GDE1Q9NZC3 331 aa6□□□□□ -1.45
USP28-202ENST00000535607 MYEF2Q9P2K5 600 aaKnown RBP6□□□□□ -1.45
USP28-202ENST00000535607 LSM7Q9UK45 103 aaKnown RBP6□□□□□ -1.45
USP28-202ENST00000535607 RCE1Q9Y256 329 aa6□□□□□ -1.45
USP28-202ENST00000535607 PLEKHA6Q9Y2H5 1048 aa6□□□□□ -1.45
USP28-202ENST00000535607 PPIL1Q9Y3C6 166 aa6□□□□□ -1.45
USP28-202ENST00000535607 MTCH2Q9Y6C9 303 aa6□□□□□ -1.45
USP28-202ENST00000535607 TRIOBPQ9H2D6 2365 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ANKRD20A5PA0PJZ0 165 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TMEM200CA6NKL6 621 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 DUXAA6NLW8 204 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 C2orf74A8MZ97 194 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 C1orf196B1AJZ1 125 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 LGALS8O00214 317 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 HMGN4O00479 90 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 SGCEO43556 437 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TBL1XO60907 577 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 PIAS2O75928 621 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF432O94892 652 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 PRAMEF12O95522 483 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 PMS2P2O95744 297 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 C1QCP02747 245 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 WNT1P04628 370 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 RPN2P04844 631 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 HEXAP06865 529 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ELANEP08246 267 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 GNSP15586 552 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF3P17036 446 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CD22P20273 847 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ACADLP28330 430 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 PPIFP30405 207 aaKnown RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 SPINT3P49223 89 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 HCCSP53701 268 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CASP9P55211 416 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 RAB8AP61006 207 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 SLC3A1Q07837 685 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TGM3Q08188 693 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 PMS2P11Q13670 270 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CDKN3Q16667 212 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 FAM76BQ5HYJ3 339 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF660Q6AZW8 331 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 DHRS7BQ6IAN0 325 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 C3orf33Q6P1S2 294 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 NIPAL3Q6P499 406 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 RPL22L1Q6P5R6 122 aaKnown RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF613Q6PF04 617 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CRTC1Q6UUV9 634 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF600Q6ZNG1 722 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 MOB3CQ70IA8 216 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 GRASPQ7Z6J2 395 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 RANBP3LQ86VV4 465 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 NUDT13Q86X67 352 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 KRTAP19-1Q8IUB9 90 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CPOQ8IVL8 374 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CMTM8Q8IZV2 173 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 SYS1Q8N2H4 156 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 RAB42Q8N4Z0 105 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TRAM1L1Q8N609 369 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 POMGNT2Q8NAT1 580 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 INO80EQ8NBZ0 244 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 SMRP1Q8NCR6 262 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TMEM185AQ8NFB2 350 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 BPIFCQ8NFQ6 507 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 OR2AK2Q8NG84 335 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 OR2AP1Q8NGE2 309 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 GLYATL2Q8WU03 294 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TCTEX1D2Q8WW35 142 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 XAGE5Q8WWM1 108 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 HSD17B8Q92506 261 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 EID2BQ96D98 161 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF285Q96NJ3 590 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 CD180Q99467 661 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 AIF1LQ9BQI0 150 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ALX4Q9H161 411 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 EPHX3Q9H6B9 360 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 EGLN3Q9H6Z9 239 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 MVB12BQ9H7P6 319 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TRPV4Q9HBA0 871 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 HAO2Q9NYQ3 351 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 PIPOXQ9P0Z9 390 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 TAAR2Q9P1P5 351 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 ZNF629Q9UEG4 869 aaPredicted RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 OPN4Q9UHM6 478 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 MRTO4Q9UKD2 239 aaKnown RBP5.99□□□□□ -1.45
USP28-202ENST00000535607 GPR52Q9Y2T5 361 aa5.99□□□□□ -1.45
USP28-202ENST00000535607 XIRP2A4UGR9 3374 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 275.3 ms