RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SLC6A15Q9H2J7 730 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ISG20L2Q9H9L3 353 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 ZFP64Q9NPA5 681 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 SLC13A4Q9UKG4 626 aa7.39□□□□□ -1.23
NEDD8-207ENST00000533242 RBMX2Q9Y388 322 aaKnown RBP7.39□□□□□ -1.23
NEDD8-207ENST00000533242 FREM3P0C091 2139 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 IQCMA0A1B0GVH7 501 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 A0A1W2PQ09 198 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 A0A1W2PQL4 384 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TMEM129A0AVI4 362 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 CYR61O00622 381 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF354AO60765 605 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SNX4O95219 450 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 IL2RAP01589 272 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TSPAN19P0C672 248 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 IL7P13232 177 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 MYL12AP19105 171 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TBXA2RP21731 343 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 CASP3P42574 277 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 MGAT2Q10469 447 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TPBGQ13641 420 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SERTAD2Q14140 314 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ARHGAP11BQ3KRB8 267 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 GLYR1Q49A26 553 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SLC35F1Q5T1Q4 408 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SMARCD3Q6STE5 483 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TMPRSS11AQ6ZMR5 421 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 GDPGP1Q6ZNW5 385 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 MBOAT2Q6ZWT7 520 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 CPOQ8IVL8 374 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 DND1Q8IYX4 353 aaKnown RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 LINC00471Q8N535 108 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF321PQ8N8H1 164 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 C7orf57Q8NEG2 295 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SLC22A8Q8TCC7 542 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SLC2A12Q8TD20 617 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 PAQR8Q8TEZ7 354 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 NANOS1Q8WY41 292 aaKnown RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ITFG2Q969R8 447 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 HDHD5Q9BXW7 423 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 OR8D2Q9GZM6 311 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF350Q9GZX5 532 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 UBQLN3Q9H347 655 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TRAPPC4Q9Y296 219 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SIRT4Q9Y6E7 314 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 KIAA1549Q9HCM3 1950 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 SLC35F4A4IF30 521 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 LRRC3CA6NJW4 275 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 C17orf105B2RV13 164 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 HRKO00198 91 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 IL18BPO95998 194 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 HRGP04196 525 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 RFPL3SP0C7P2 107 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 CLUP10909 449 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 NR4A2P43354 598 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 KLHL22Q53GT1 634 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 EXOSC6Q5RKV6 272 aaKnown RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 LYPD8Q6UX82 237 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 RRM2BQ7LG56 351 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 NR2C2APQ86WQ0 139 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 PM20D2Q8IYS1 436 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ARIH2OSQ8N7S6 290 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 LINC01560Q8TB33 94 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 NUBPLQ8TB37 319 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 ZNF721Q8TF20 911 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 OTULINQ96BN8 352 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 WDFY2Q96P53 400 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 TMED9Q9BVK6 235 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 MTHFD2LQ9H903 347 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 MARCH7Q9H992 704 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 JKAMPQ9P055 326 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 CRNNQ9UBG3 495 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 COPS7AQ9UBW8 275 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 C19orf53Q9UNZ5 99 aaPredicted RBP7.38□□□□□ -1.23
NEDD8-207ENST00000533242 CMAHPQ9Y471 501 aa7.38□□□□□ -1.23
NEDD8-207ENST00000533242 DOCK7Q96N67 2140 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 HRNRQ86YZ3 2850 aaPredicted RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 C2orf92A0A1B0GVN3 265 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 J3QRE1 110 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 OR5F1O95221 314 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 IL1AP01583 271 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CELP19835 753 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 RPS4Y1P22090 263 aaKnown RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CTSSP25774 331 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 NOS3P29474 1203 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 RCVRNP35243 200 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 RFX3P48380 749 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 TMED10P49755 219 aaKnown RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CRYZQ08257 329 aaKnown RBP7.37□□□□□ -1.23
NEDD8-207ENST00000533242 STX4Q12846 297 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 PRICKLE4Q2TBC4 344 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 Q5PR19 223 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 DCST2Q5T1A1 773 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 NSUN5P2Q63ZY6 315 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 PLBD1Q6P4A8 553 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 CD200R1LQ6Q8B3 271 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 PEX5LQ8IYB4 626 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 UBE2J2Q8N2K1 259 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 TMEM99Q8N816 258 aa7.37□□□□□ -1.23
NEDD8-207ENST00000533242 OR4N2Q8NGD1 307 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms