RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	CTDSP1	Q9GZU7	261 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	SPHK2	Q9NRA0	654 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CHRAC1	Q9NRG0	131 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM160	Q9NX00	188 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	CNIH4	Q9P003	139 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ARMCX1	Q9P291	453 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	RHCG	Q9UBD6	479 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	IL20RA	Q9UHF4	553 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	GNG8	Q9UK08	70 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF225	Q9UK10	706 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	NPIPA1	Q9UND3	350 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	MRPS18B	Q9Y676	258 aa	Known RBP	5.06	□□□□□ -1.6
CD44-231	ENST00000531110	POMT1	Q9Y6A1	747 aa		5.06	□□□□□ -1.6
CD44-231	ENST00000531110	ADAMTSL3	P82987	1691 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TRAV8-7	A0A075B6U6	113 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	FAM237B	A0A1B0GVD1	139 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM269	A0A1B0GVZ9	245 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110		A0A1W2PPV4	95 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	C20orf202	A1L168	122 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM213	A2RRL7	107 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TRIM49B	A6NDI0	452 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	DISC1	C4P0D8	188 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110		K7ERU9	68 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	UPK1A	O00322	258 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	FABP7	O15540	132 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RGS14	O43566	566 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	OR2J2	O76002	312 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	VNN2	O95498	520 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	GCG	P01275	180 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	APOD	P05090	189 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	PCCB	P05166	539 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	OR5AC1	P0C628	307 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CSH1	P0DML2	217 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CSH2	P0DML3	217 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SMIM10L1	P0DMW3	83 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ABO	P16442	354 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	UGT2B7	P16662	529 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	HLA-G	P17693	338 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CHRNB2	P17787	502 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TBP	P20226	339 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	EFNA1	P20827	205 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ANOS1	P23352	680 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	MPZ	P25189	248 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ELK4	P28324	431 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SSTR2	P30874	369 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RPL22	P35268	128 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RPL4	P36578	427 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	VSX2	P58304	361 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	DAOA	P59103	153 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ZP1	P60852	638 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	NCS1	P62166	190 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RPL19	P84098	196 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	OGDH	Q02218	1023 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CACNG1	Q06432	222 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	PTP4A2	Q12974	167 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RCAN2	Q14206	197 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	OPCML	Q14982	345 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SF3A2	Q15428	464 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TAF9	Q16594	264 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	MEP1B	Q16820	701 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	GLYR1	Q49A26	553 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	HIKESHI	Q53FT3	197 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	PRAMEF8	Q5VWM4	474 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	PRAMEF7	Q5VXH5	474 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	C18orf63	Q68DL7	685 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CYB5R2	Q6BCY4	276 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	LCN8	Q6JVE9	175 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	APOBEC3H	Q6NTF7	200 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	DOK6	Q6PKX4	331 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	C19orf48	Q6RUI8	117 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SPESP1	Q6UW49	350 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ATRAID	Q6UW56	229 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SSX7	Q7RTT5	188 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TMED4	Q7Z7H5	227 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	LINC01551	Q86U37	167 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	PTOV1	Q86YD1	416 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CPO	Q8IVL8	374 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	NHLRC2	Q8NBF2	726 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	OR1S1	Q8NH92	325 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	THAP6	Q8TBB0	222 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF596	Q8TC21	504 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	M1AP	Q8TC57	530 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RXFP4	Q8TDU9	374 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RNF133	Q8WVZ7	376 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SAT2	Q96F10	170 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SMIM10	Q96HG1	83 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ADGRG7	Q96K78	797 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	PRAP1	Q96NZ9	151 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TSNAX	Q99598	290 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SULT4A1	Q9BR01	284 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	GLIS2	Q9BZE0	524 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ARV1	Q9H2C2	271 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	HIPK2	Q9H2X6	1198 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ST6GALNAC4	Q9H4F1	302 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	OSER1	Q9NX31	292 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	ADA2	Q9NZK5	511 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	GSKIP	Q9P0R6	139 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	UBQLN1	Q9UMX0	589 aa	Known RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TFR2	Q9UP52	801 aa		5.05	□□□□□ -1.6

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