RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MCIDASD6RGH6 385 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 MGRN1O60291 552 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 GMNNO75496 209 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 UBL3O95164 117 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 PGA4P0DJD7 388 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 PGA3P0DJD8 388 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 IDH3GP51553 393 aaPredicted RBP17.92■□□□□ 0.46
VPS28-206ENST00000526734 GNGT1P63211 74 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 RAB35Q15286 201 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 TAF11Q15544 211 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 NRN1LQ496H8 165 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 VTCN1Q7Z7D3 282 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 MDP1Q86V88 176 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 CYP4Z1Q86W10 505 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 CIARTQ8N365 385 aaPredicted RBP17.92■□□□□ 0.46
VPS28-206ENST00000526734 HSH2DQ96JZ2 352 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 ANKRD19PQ9H560 264 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 ZNF442Q9H7R0 627 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 CA10Q9NS85 328 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 C20orf141Q9NUB4 165 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 B3GNT2Q9NY97 397 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 ARL2BPQ9Y2Y0 163 aa17.92■□□□□ 0.46
VPS28-206ENST00000526734 DHHO43323 396 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 DCTN3O75935 186 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 SEC14L2O76054 403 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 FARS2O95363 451 aaKnown RBP17.91■□□□□ 0.46
VPS28-206ENST00000526734 SERPINA1P01009 418 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 B4GALT1P15291 398 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 ACVR1BP36896 505 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 NUDT6P53370 316 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 SNRPD2P62316 118 aaKnown RBP17.91■□□□□ 0.46
VPS28-206ENST00000526734 TNK1Q13470 666 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 MELKQ14680 651 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 DNM1P46Q6ZS02 220 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 RNF113BQ8IZP6 322 aaKnown RBP17.91■□□□□ 0.46
VPS28-206ENST00000526734 NOXO1Q8NFA2 376 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 BPIFA2Q96DR5 249 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 SEPHS2Q99611 448 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 GMPR2Q9P2T1 348 aaKnown RBP17.91■□□□□ 0.46
VPS28-206ENST00000526734 HIF3AQ9Y2N7 669 aa17.91■□□□□ 0.46
VPS28-206ENST00000526734 SETD2Q9BYW2 2564 aaPredicted RBP17.9■□□□□ 0.46
VPS28-206ENST00000526734 B9A039 149 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 SMAD7O15105 426 aaKnown RBP17.9■□□□□ 0.46
VPS28-206ENST00000526734 RAB36O95755 333 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 CSF3P09919 207 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 CD79AP11912 226 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 SERPINF1P36955 418 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 CLRN1P58418 232 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 NPRL3Q12980 569 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 EFNB3Q15768 340 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 SWI5Q1ZZU3 235 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 WDFY1Q8IWB7 410 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 ACOT11Q8WXI4 607 aaPredicted RBP17.9■□□□□ 0.46
VPS28-206ENST00000526734 NDE1Q9NXR1 346 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 ADA2Q9NZK5 511 aa17.9■□□□□ 0.46
VPS28-206ENST00000526734 GDF2Q9UK05 429 aaPredicted RBP17.9■□□□□ 0.46
VPS28-206ENST00000526734 SAMD4AQ9UPU9 718 aaKnown RBP17.9■□□□□ 0.46
VPS28-206ENST00000526734 IGHV2OR16-5A0A0B4J2B6 119 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 ZNF503-AS2A6NEH8 195 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 HLA-HP01893 362 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 F13BP05160 661 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 OR8G3PP0DMU2 310 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 IFI30P13284 250 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 CALCRP30988 508 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 AQP2P41181 271 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 SLC9A3P48764 834 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 ZNF84P51523 738 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 HIST3H3Q16695 136 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 FAM205BPQ63HN1 556 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 CLEC2AQ6UVW9 174 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 PIGWQ7Z7B1 504 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 CDK20Q8IZL9 346 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 FNDC8Q8TC99 324 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 ASB10Q8WXI3 467 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 LRRC37BQ96QE4 947 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 SMR3AQ99954 134 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 RHNO1Q9BSD3 238 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 MRPL13Q9BYD1 178 aaKnown RBP17.89■□□□□ 0.45
VPS28-206ENST00000526734 SMURF2Q9HAU4 748 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 MAN2C1Q9NTJ4 1040 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 TMEM38BQ9NVV0 291 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 SPEF1Q9Y4P9 236 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 FKBP7Q9Y680 259 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 ENPP4Q9Y6X5 453 aa17.89■□□□□ 0.45
VPS28-206ENST00000526734 ZNF469Q96JG9 3925 aaPredicted RBP17.89■□□□□ 0.45
VPS28-206ENST00000526734 SSX4O60224 188 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 NDUFS7O75251 213 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 LY6G6DO95868 133 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 CELA3BP08861 270 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 QDPRP09417 244 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 SAGP10523 405 aaPredicted RBP17.88■□□□□ 0.45
VPS28-206ENST00000526734 ACADSP16219 412 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 ZNF133P52736 654 aaPredicted RBP17.88■□□□□ 0.45
VPS28-206ENST00000526734 EFNA4P52798 201 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 PRKCDQ05655 676 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 ADIPOQQ15848 244 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 ALG10Q5BKT4 473 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 GLYATQ6IB77 296 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 LRFN4Q6PJG9 635 aa17.88■□□□□ 0.45
VPS28-206ENST00000526734 PGAM4Q8N0Y7 254 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms