RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 TMEM19Q96HH6 336 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 NSL1Q96IY1 281 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 DUX5Q96PT3 197 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 TSPAN32Q96QS1 320 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 OR2M2Q96R28 347 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 ZNF587Q96SQ5 575 aaPredicted RBP5.65□□□□□ -1.5
CD44-221ENST00000526000 CGREF1Q99674 301 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 PTDSS2Q9BVG9 487 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 LINC00470Q9BZP3 86 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 PAIP1Q9H074 479 aaKnown RBP5.65□□□□□ -1.5
CD44-221ENST00000526000 C1orf21Q9H246 121 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 ZNF442Q9H7R0 627 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 TPT1P8Q9HAU6 139 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 ZNF275Q9NSD4 429 aaPredicted RBP5.65□□□□□ -1.5
CD44-221ENST00000526000 MED29Q9NX70 200 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 CALML5Q9NZT1 146 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 TAAR3PQ9P1P4 343 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 ARMCX1Q9P291 453 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 GRIP1Q9Y3R0 1128 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 PCDHGB1Q9Y5G3 927 aa5.65□□□□□ -1.5
CD44-221ENST00000526000 LOC100653049A0A140TA62 436 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 A0A1W2PPW3 197 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 TMEM89A2RUT3 159 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 ZNF726A6NNF4 738 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 FTCDNL1E5RQL4 147 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 C11orf98E9PRG8 122 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 MS4A18H0YCH9 400 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 RPL36A-HNRNPH2H7BZ11 118 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 TRIM77I1YAP6 450 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 CLIC1O00299 241 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 FAAHO00519 579 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 EBAG9O00559 213 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 FBP2O00757 339 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 TPD52L2O43399 206 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 PLPP2O43688 288 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 NPIPB7O75200 414 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 KRT34O76011 436 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 ZNF432O94892 652 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 MPZL1O95297 269 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 MSMBP08118 114 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 HOXB1P14653 301 aaPredicted RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 B4GALT1P15291 398 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 NQO1P15559 274 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 GPX2P18283 190 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 EPHA1P21709 976 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 AHCYP23526 432 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 DSTNP60981 165 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 ERVS71-1P61550 626 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 RAB1AP62820 205 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 CCL8P80075 99 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 MYBPC1Q00872 1141 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 GLO1Q04760 184 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 SF3A3Q12874 501 aaKnown RBP eCLIP5.64□□□□□ -1.51
CD44-221ENST00000526000 MFSD13AQ14CX5 517 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 LARS2Q15031 903 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 TSTQ16762 297 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 MS4A18Q3C1V0 323 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 RUNDC3AQ59EK9 446 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 ERICH5Q6P6B1 374 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 SLC2A7Q6PXP3 512 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 H1FNTQ75WM6 255 aaPredicted RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 RETREG3Q86VR2 466 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 C20orf196Q8IYI0 205 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 PIK3C3Q8NEB9 887 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 SEMA6DQ8NFY4 1073 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 OR6N1Q8NGY5 312 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 STK35Q8TDR2 534 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 SLC38A5Q8WUX1 472 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 GTF3AQ92664 365 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 POP5Q969H6 163 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 MAL2Q969L2 176 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 LRRC58Q96CX6 371 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 RCN3Q96D15 328 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 BOD1Q96IK1 185 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 SLC6A7Q99884 636 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 RSPO3Q9BXY4 272 aaPredicted RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 MS4A5Q9H3V2 200 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 PIF1Q9H611 641 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 TMEM38AQ9H6F2 299 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 EVA1AQ9H8M9 152 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 RNF121Q9H920 327 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 CACYBPQ9HB71 228 aaKnown RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 B3GNT2Q9NY97 397 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 B3GAT1Q9P2W7 334 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 P2RX2Q9UBL9 471 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.64□□□□□ -1.51
CD44-221ENST00000526000 USP22Q9UPT9 525 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 SPEF1Q9Y4P9 236 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 PPIAL4AQ9Y536 164 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 CACNG2Q9Y698 323 aa5.64□□□□□ -1.51
CD44-221ENST00000526000 IGKV1D-42A0A075B6H8 117 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 A0A1B0GWA3 101 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 ZNF99A8MXY4 864 aaPredicted RBP5.63□□□□□ -1.51
CD44-221ENST00000526000 AIM2O14862 343 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 TPST1O60507 370 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 BCL10O95999 233 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 LCKP06239 509 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 ZNF35P13682 527 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 PCMT1P22061 227 aa5.63□□□□□ -1.51
CD44-221ENST00000526000 GLRXP35754 106 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms