RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CD226Q15762 336 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHI3L2Q15782 390 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TNXAQ16473 311 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF74Q16587 644 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 POU2AF1Q16633 256 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DUSP7Q16829 419 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYP51A1Q16850 503 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP6V1FQ16864 119 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IMPG1Q17R60 797 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCTD19Q17RG1 926 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C5orf64Q2M2E5 130 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPEL1Q2QD12 228 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM249Q2WGJ8 235 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIM16LQ309B1 348 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRMT5Q32P41 509 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDUFAF6Q330K2 333 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM30BQ3MIR4 351 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF876PQ49A33 203 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 COX19Q49B96 90 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GTDC1Q4AE62 458 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HIGD2BQ4VC39 106 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C2CD6Q53TS8 623 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIGGQ5H8A4 983 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GCSAMLQ5JQS6 135 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPANXN4Q5MJ08 99 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAMD4BQ5PRF9 694 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PAPPA-AS1Q5QFB9 102 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBM48Q5RL73 367 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 LY6G6FQ5SQ64 297 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLVS2Q5SYC1 327 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IDNKQ5T6J7 187 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 LCE1AQ5T7P2 110 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OGFRL1Q5TC84 451 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEL1L2Q5TEA6 688 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SDHAF4Q5VUM1 108 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KHDRBS2Q5VWX1 349 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RNLSQ5VYX0 342 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C9orf57Q5W0N0 161 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC22A10Q63ZE4 541 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CTRB2Q6GPI1 263 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 THOC7Q6I9Y2 204 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4C11Q6IEV9 310 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FRMPD2BQ6IN97 320 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPOPLQ6IQ16 392 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOBEC3HQ6NTF7 200 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RWDD4Q6NW29 188 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPP1R2P3Q6NXS1 205 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PNCKQ6P2M8 343 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAHD1Q6P587 224 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 UQCC3Q6UW78 93 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM207Q6UWW9 146 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR82Q6UXN9 313 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GFRALQ6UXV0 394 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 APOOLQ6UXV4 268 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAD9BQ6WBX8 426 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HACD2Q6Y1H2 254 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSDL2Q6YN16 418 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF730Q6ZMV8 503 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF836Q6ZNA1 936 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FRRS1Q6ZNA5 592 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C19orf35Q6ZS72 473 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC25A48Q6ZT89 311 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 LINC00336Q6ZUF6 198 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C9orf139Q6ZV77 190 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q6ZVQ6 151 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 USP50Q70EL3 339 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MOB2Q70IA6 237 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 COX15Q7KZN9 410 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABHD13Q7L211 337 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHMP1BQ7LBR1 199 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NIPA1Q7RTP0 329 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM122BQ7Z309 247 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PEX26Q7Z412 305 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUFIP2Q7Z417 695 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CMC1Q7Z7K0 106 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPL52Q86TS9 123 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SETD3Q86TU7 594 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBM23Q86U06 439 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 AKAP14Q86UN6 197 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NFE4Q86UQ8 179 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIGZQ86VD9 579 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYPOPQ86VE0 399 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC47A2Q86VL8 602 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 UNC93AQ86WB7 457 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFNEQ86WN2 208 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLA2G4DQ86XP0 818 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM219Q86XT9 240 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF677Q86XU0 584 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC13A5Q86YT5 568 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FUNDC1Q8IVP5 155 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DND1Q8IYX4 353 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZBED8Q8IZ13 594 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CMTM1Q8IZ96 169 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIRREL3Q8IZU9 778 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPAG16Q8N0X2 631 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYP4Z2PQ8N1L4 340 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SVOPLQ8N434 492 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 DNAJC22Q8N4W6 341 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MS4A15Q8N5U1 240 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CSNK1A1LQ8N752 337 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms