RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MUC20Q8N307 709 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 DGAT2Q96PD7 388 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 LPAR4Q99677 370 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 LMF2Q9BU23 707 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 ZMAT3Q9HA38 289 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 PRTFDC1Q9NRG1 225 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 ZNF275Q9NSD4 429 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 MOKQ9UQ07 419 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 OR4C45A6NMZ5 311 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 EFCAB7A8K855 629 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 CTNSO60931 367 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 OR2A4O95047 310 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 SPDEFO95238 335 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 TMEM81Q6P7N7 255 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 LRRN1Q6UXK5 716 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 TMUB2Q71RG4 321 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 TAF8Q7Z7C8 310 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 DUSP19Q8WTR2 217 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 WBP1Q96G27 269 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 KLHL15Q96M94 604 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 OR2A7Q96R45 310 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 DMRTA2Q96SC8 542 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 GRHPRQ9UBQ7 328 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 OPN4Q9UHM6 478 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 SLC22A13Q9Y226 551 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 PLGP00747 810 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 CD3DP04234 171 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 CD1AP06126 327 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 CPN1P15169 458 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 CCKBRP32239 447 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 SLC6A19Q695T7 634 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 TMED4Q7Z7H5 227 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 PRR22Q8IZ63 422 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 STPG2Q8N412 459 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 RELL2Q8NC24 303 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 TSEN15Q8WW01 171 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 KTI12Q96EK9 354 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 REG4Q9BYZ8 158 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 OBP2AQ9NY56 170 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 FBXL2Q9UKC9 423 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 FBXL3Q9UKT7 428 aa8.41□□□□□ -1.06
LIMCH1-215ENST00000512632 H7C417 338 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 HNRNPA2B1P22626 353 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 POU3F4P49335 361 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 SORDQ00796 357 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 ZNF74Q16587 644 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 C1QL3Q5VWW1 255 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 RGS7BPQ6MZT1 257 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 ARMC6Q6NXE6 501 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 BIVMQ86UB2 503 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 MCATQ8IVS2 390 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 EID2Q8N6I1 236 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 OR2AK2Q8NG84 335 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 OR13H1Q8NG92 308 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 G6PC3Q9BUM1 346 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 OR10A5Q9H207 317 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 MTFP1Q9UDX5 166 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 KCNG2Q9UJ96 466 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 TDRD6O60522 2096 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 FOXS1O43638 330 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 RP2O75695 350 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 HIST1H2ABP04908 130 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 IL5P05113 134 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 RNH1P13489 461 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 MAOBP27338 520 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 MRPS10P82664 201 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 RPL18Q07020 188 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 MED25Q71SY5 747 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 HIST3H2AQ7L7L0 130 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 ZNF563Q8TA94 476 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 HIST1H2ACQ93077 130 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 LRFN5Q96NI6 719 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 COMMD4Q9H0A8 199 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 PPA2Q9H2U2 334 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 EXO5Q9H790 373 aa8.4□□□□□ -1.06
LIMCH1-215ENST00000512632 SNRPGP15A8MWD9 76 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 C5orf67F2Z3F1 127 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 XRCC3O43542 346 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 RBMS2Q15434 407 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC36A1Q7Z2H8 476 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 FAM122BQ7Z309 247 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC51BQ86UW2 128 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 ZNF227Q86WZ6 799 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 PM20D2Q8IYS1 436 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 SLC43A2Q8N370 569 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 PLPP7Q8NBV4 271 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 GPR148Q8TDV2 347 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 ST8SIA4Q92187 359 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 MRGPRX1Q96LB2 322 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 PRDM9Q9NQV7 894 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 KIF25Q9UIL4 384 aa8.4□□□□□ -1.07
LIMCH1-215ENST00000512632 LINC01565O15544 149 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 ABHD16AO95870 558 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 IGF2P01344 180 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 CSN2P05814 226 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 LIPCP11150 499 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 MAPK3P27361 379 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 FAUP35544 74 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 EPHA4P54764 986 aa8.39□□□□□ -1.07
LIMCH1-215ENST00000512632 RPS4XP62701 263 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms