RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CLN3Q13286 438 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 MRM1Q6IN84 353 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 MEPCEQ7L2J0 689 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 C1QL4Q86Z23 238 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 PIGXQ8TBF5 258 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 MYEOVQ96EZ4 313 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 PRODH2Q9UF12 536 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 WIF1Q9Y5W5 379 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3DA0A087WVF3 549 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3IA0A087WXS9 549 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3EA0A087X179 549 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3KA0A087X1G2 549 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TRBV2A0A0J9YWF9 115 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 A0A1W2PQH9 124 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3FA6NER0 549 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3LB9A6J9 549 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TGOLN2O43493 480 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 PRAMEF11O60813 436 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 CA11O75493 328 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 MBPP02686 304 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 CRHP06850 196 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 MAOAP21397 527 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 GRK4P32298 578 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TSFMP43897 325 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TDGF1P3P51864 188 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBX4P57082 545 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 SNRPNP63162 240 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 ARHGAP1Q07960 439 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 ENPP2Q13822 863 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 UBE2V2Q15819 145 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3CQ6IPX1 549 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 DEGS2Q6QHC5 323 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3Q8IZP1 549 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 CYB561A3Q8NBI2 242 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 OR2T33Q8NG76 320 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF385AQ96PM9 386 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 IL36AQ9UHA7 158 aa11.02□□□□□ -0.65
LIMCH1-213ENST00000511496 TDRD15B5MCY1 1934 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 SLC5A10A0PJK1 596 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 H7C417 338 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 MMP10P09238 476 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 FAM189A2Q15884 450 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 BATFQ16520 125 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 UPP1Q16831 310 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 PRPF38BQ5VTL8 546 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 NCR3LG1Q68D85 454 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 STEAP1BQ6NZ63 245 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 Q6ZRG5 221 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 LRP11Q86VZ4 500 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 RFLNBQ8N5W9 214 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 C16orf78Q8WTQ4 265 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 LCN9Q8WX39 176 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 HAVCR1Q96D42 359 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 CAMK1GQ96NX5 476 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 NKX3-1Q99801 234 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 NRXN2Q9P2S2 1712 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 MTFP1Q9UDX5 166 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 KCNG2Q9UJ96 466 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 PRG3Q9Y2Y8 225 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 SLCO1B1Q9Y6L6 691 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 TRAV18A0A075B6X5 111 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF749O43361 778 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 DIRAS3O95661 229 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 PTBP3O95758 552 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 AMY2AP04746 511 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 TAS2R43P59537 309 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 CD81P60033 236 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 RPS23P62266 143 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF763Q0D2J5 394 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF697Q5TEC3 545 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 DMKNQ6E0U4 476 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 C16orf54Q6UWD8 224 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 OR13C2Q8NGS9 318 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 SVIPQ8NHG7 77 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 ASB17Q8WXJ9 295 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 EID2BQ96D98 161 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 DNAJA3Q96EY1 480 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 CXXC1Q9P0U4 656 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 C5AR2Q9P296 337 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 NCDNQ9UBB6 729 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 PIN4Q9Y237 131 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 MCM3APO60318 1980 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 ZSWIM8A7E2V4 1837 aa11.01□□□□□ -0.65
LIMCH1-213ENST00000511496 A0A087WV62 115 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 B4E171 279 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 PLGP00747 810 aaPredicted RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 LRG1P02750 347 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 CSF1P09603 554 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 FURINP09958 794 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 LINC00614P0C842 121 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 FUT1P19526 365 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 EDNRAP25101 427 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 KIR3DL2P43630 455 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 RPL29P47914 159 aaKnown RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 HMGN3Q15651 99 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 RNF151Q2KHN1 245 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 PSRC1Q6PGN9 363 aaPredicted RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 OVCH1Q7RTY7 1134 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 NRMQ8IXM6 262 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 GALNT16Q8N428 558 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms