RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 GPX7Q96SL4 187 aaPredicted RBP12.86□□□□□ -0.35
LIMS3-205ENST00000487150 GRHPRQ9UBQ7 328 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 FBXL3Q9UKT7 428 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 SIGLEC7Q9Y286 467 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 SLC25A15Q9Y619 301 aa12.86□□□□□ -0.35
LIMS3-205ENST00000487150 CDC42EP2O14613 210 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 E2F6O75461 281 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 FARS2O95363 451 aaKnown RBP12.85□□□□□ -0.35
LIMS3-205ENST00000487150 FCGR1AP12314 374 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 APEHP13798 732 aaKnown RBP12.85□□□□□ -0.35
LIMS3-205ENST00000487150 ACADSP16219 412 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 GSTM3P21266 225 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 PTAFRP25105 342 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 SLC6A6P31641 620 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 RPS6KA3P51812 740 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 ARHGDIAP52565 204 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 CBX1P83916 185 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 TSPAN31Q12999 210 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 TOP3AQ13472 1001 aaPredicted RBP12.85□□□□□ -0.35
LIMS3-205ENST00000487150 SEC23BQ15437 767 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 C3orf36Q3SXR2 165 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 TBRG1Q3YBR2 411 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 ARMC4Q5T2S8 1044 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 C9orf135Q5VTT2 229 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 C1orf94Q6P1W5 598 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 SMARCD3Q6STE5 483 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 DPY19L2P2Q6ZN68 376 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 ZNF627Q7L945 461 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 ADCK1Q86TW2 530 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 FAM169BQ8N8A8 192 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 OR52L1Q8NGH7 329 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 OR52N5Q8NH56 324 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 FOXB1Q99853 325 aa12.85□□□□□ -0.35
LIMS3-205ENST00000487150 DENND2DQ9H6A0 471 aaPredicted RBP12.85□□□□□ -0.35
LIMS3-205ENST00000487150 KLF4O43474 513 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 DEAF1O75398 565 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 CD3EP07766 207 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 GUCA1AP43080 201 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 LSM11P83369 360 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 CD47Q08722 323 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 LAPTM4AQ15012 233 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 THEM4Q5T1C6 240 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 ALKBH2Q6NS38 261 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 ASRGL1Q7L266 308 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 ZER1Q7Z7L7 766 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 LSRQ86X29 649 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 CDC20BQ86Y33 519 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 DEPDC4Q8N2C3 294 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 ARIH2OSQ8N7S6 290 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 PAPD5Q8NDF8 572 aaKnown RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 OR4C15Q8NGM1 316 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 DNAJC9Q8WXX5 260 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 NINJ1Q92982 152 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 PLPPR2Q96GM1 343 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 ZNF570Q96NI8 536 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 RAB3IPQ96QF0 476 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 RBP7Q96R05 134 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 TNFRSF13CQ96RJ3 184 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 KCNS3Q9BQ31 491 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 KATNB1Q9BVA0 655 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 MRPL13Q9BYD1 178 aaKnown RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 CCM2LQ9NUG4 571 aaPredicted RBP12.84□□□□□ -0.35
LIMS3-205ENST00000487150 DNAJB9Q9UBS3 223 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 RNF115Q9Y4L5 304 aa12.84□□□□□ -0.35
LIMS3-205ENST00000487150 DHHO43323 396 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 IDH3BO43837 385 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 FKBP6O75344 327 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 TRMUO75648 421 aaKnown RBP12.83□□□□□ -0.36
LIMS3-205ENST00000487150 FUT4P22083 530 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 SDHAP31040 664 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 GSSP48637 474 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 ARF1P84077 181 aaKnown RBP12.83□□□□□ -0.36
LIMS3-205ENST00000487150 LGALS3BPQ08380 585 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 HIST3H3Q16695 136 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 MICAQ29983 383 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 NCMAPQ5T1S8 102 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 PGBD2Q6P3X8 592 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 ZNF813Q6ZN06 617 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 ZNF620Q6ZNG0 422 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 C20orf204Q6ZNR8 217 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 LINGO2Q7L985 606 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 YTHDF3Q7Z739 585 aaKnown RBP12.83□□□□□ -0.36
LIMS3-205ENST00000487150 CLDN22Q8N7P3 220 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 LRRC75AQ8NAA5 344 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 ZNF519Q8TB69 540 aa12.83□□□□□ -0.36
LIMS3-205ENST00000487150 BCL2L2Q92843 193 aaPredicted RBP12.83□□□□□ -0.36
LIMS3-205ENST00000487150 IMPA2O14732 288 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 TMCC2O75069 709 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 UBL3O95164 117 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 QDPRP09417 244 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 OR8G3PP0DMU2 310 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 NPR2P20594 1047 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 ARR3P36575 388 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 ACVR1BP36896 505 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 ZNF133P52736 654 aaPredicted RBP12.82□□□□□ -0.36
LIMS3-205ENST00000487150 COX10Q12887 443 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 KRR1Q13601 381 aaKnown RBP12.82□□□□□ -0.36
LIMS3-205ENST00000487150 HIKESHIQ53FT3 197 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 C10orf128Q5T292 105 aa12.82□□□□□ -0.36
LIMS3-205ENST00000487150 DNM1P34Q6PK57 102 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms