RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 GRHPRQ9UBQ7 328 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 FBXL3Q9UKT7 428 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 SIGLEC7Q9Y286 467 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 SLC25A15Q9Y619 301 aa12.86□□□□□ -0.35
LIMS1-206ENST00000414829 CDC42EP2O14613 210 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 E2F6O75461 281 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 FARS2O95363 451 aaKnown RBP12.85□□□□□ -0.35
LIMS1-206ENST00000414829 FCGR1AP12314 374 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 APEHP13798 732 aaKnown RBP12.85□□□□□ -0.35
LIMS1-206ENST00000414829 ACADSP16219 412 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 GSTM3P21266 225 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 PTAFRP25105 342 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 SLC6A6P31641 620 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 RPS6KA3P51812 740 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 ARHGDIAP52565 204 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 CBX1P83916 185 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 TSPAN31Q12999 210 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 TOP3AQ13472 1001 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-206ENST00000414829 SEC23BQ15437 767 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 C3orf36Q3SXR2 165 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 TBRG1Q3YBR2 411 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 ARMC4Q5T2S8 1044 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 C9orf135Q5VTT2 229 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 C1orf94Q6P1W5 598 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 SMARCD3Q6STE5 483 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 DPY19L2P2Q6ZN68 376 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 ZNF627Q7L945 461 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 ADCK1Q86TW2 530 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 FAM169BQ8N8A8 192 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 OR52L1Q8NGH7 329 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 OR52N5Q8NH56 324 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 FOXB1Q99853 325 aa12.85□□□□□ -0.35
LIMS1-206ENST00000414829 DENND2DQ9H6A0 471 aaPredicted RBP12.85□□□□□ -0.35
LIMS1-206ENST00000414829 KLF4O43474 513 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 DEAF1O75398 565 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 CD3EP07766 207 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 GUCA1AP43080 201 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 LSM11P83369 360 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 CD47Q08722 323 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 LAPTM4AQ15012 233 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 THEM4Q5T1C6 240 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 ALKBH2Q6NS38 261 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 ASRGL1Q7L266 308 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 ZER1Q7Z7L7 766 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 LSRQ86X29 649 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 CDC20BQ86Y33 519 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 DEPDC4Q8N2C3 294 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 ARIH2OSQ8N7S6 290 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 PAPD5Q8NDF8 572 aaKnown RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 OR4C15Q8NGM1 316 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 DNAJC9Q8WXX5 260 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 NINJ1Q92982 152 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 PLPPR2Q96GM1 343 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 ZNF570Q96NI8 536 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 RAB3IPQ96QF0 476 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 RBP7Q96R05 134 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 TNFRSF13CQ96RJ3 184 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 KCNS3Q9BQ31 491 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 KATNB1Q9BVA0 655 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 MRPL13Q9BYD1 178 aaKnown RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 CCM2LQ9NUG4 571 aaPredicted RBP12.84□□□□□ -0.35
LIMS1-206ENST00000414829 DNAJB9Q9UBS3 223 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 RNF115Q9Y4L5 304 aa12.84□□□□□ -0.35
LIMS1-206ENST00000414829 DHHO43323 396 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 IDH3BO43837 385 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 FKBP6O75344 327 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 TRMUO75648 421 aaKnown RBP12.83□□□□□ -0.36
LIMS1-206ENST00000414829 FUT4P22083 530 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 SDHAP31040 664 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 GSSP48637 474 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 ARF1P84077 181 aaKnown RBP12.83□□□□□ -0.36
LIMS1-206ENST00000414829 LGALS3BPQ08380 585 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 HIST3H3Q16695 136 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 MICAQ29983 383 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 NCMAPQ5T1S8 102 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 PGBD2Q6P3X8 592 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF813Q6ZN06 617 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF620Q6ZNG0 422 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 C20orf204Q6ZNR8 217 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 LINGO2Q7L985 606 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 YTHDF3Q7Z739 585 aaKnown RBP12.83□□□□□ -0.36
LIMS1-206ENST00000414829 CLDN22Q8N7P3 220 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 LRRC75AQ8NAA5 344 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF519Q8TB69 540 aa12.83□□□□□ -0.36
LIMS1-206ENST00000414829 BCL2L2Q92843 193 aaPredicted RBP12.83□□□□□ -0.36
LIMS1-206ENST00000414829 IMPA2O14732 288 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 TMCC2O75069 709 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 UBL3O95164 117 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 QDPRP09417 244 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 OR8G3PP0DMU2 310 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 NPR2P20594 1047 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 ARR3P36575 388 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 ACVR1BP36896 505 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF133P52736 654 aaPredicted RBP12.82□□□□□ -0.36
LIMS1-206ENST00000414829 COX10Q12887 443 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 KRR1Q13601 381 aaKnown RBP12.82□□□□□ -0.36
LIMS1-206ENST00000414829 HIKESHIQ53FT3 197 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 C10orf128Q5T292 105 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 DNM1P34Q6PK57 102 aa12.82□□□□□ -0.36
LIMS1-206ENST00000414829 ZNF704Q6ZNC4 412 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms