RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 A0A1W2PRB8 838 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 FAM90A26D6RGX4 464 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 PRSS44E7EML9 344 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 NPIPA2E9PIF3 369 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 NPIPA3F8WFD2 350 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 EMC8O43402 210 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 GLSO94925 669 aaPredicted RBP5.63□□□□□ -1.51
USP40-202ENST00000409945 IGHG3P01860 377 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ALOX5P09917 674 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 LBPP18428 481 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ATP6V1C1P21283 382 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 RFX3P48380 749 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 AQP5P55064 265 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 LRRC74AQ0VAA2 488 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 RCAN2Q14206 197 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ZNF260Q3ZCT1 412 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 XKR7Q5GH72 579 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ANXA8L1Q5VT79 327 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ENPP6Q6UWR7 440 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ANGPTL8Q6UXH0 198 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 OR2L13Q8N349 312 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 OR7G2Q8NG99 324 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 OR4K17Q8NGC6 315 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 OR10Q1Q8NGQ4 319 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 CLHC1Q8NHS4 586 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 TMED6Q8WW62 240 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 OR5P2Q8WZ92 322 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 MCUR1Q96AQ8 359 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 FCRL1Q96LA6 429 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 C3orf30Q96M34 536 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 C1orf50Q9BV19 199 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 TBL1XR1Q9BZK7 514 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 DPY30Q9C005 99 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 NMUR2Q9GZQ4 415 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 CSTL1Q9H114 145 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 TUBB1Q9H4B7 451 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 IL36RNQ9UBH0 155 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 DKKL1Q9UK85 242 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 HECTD1Q9ULT8 2610 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 ABCG2Q9UNQ0 655 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 CCL27Q9Y4X3 112 aa5.63□□□□□ -1.51
USP40-202ENST00000409945 KLF2Q9Y5W3 355 aaPredicted RBP5.63□□□□□ -1.51
USP40-202ENST00000409945 DIDO1Q9BTC0 2240 aaKnown RBP5.63□□□□□ -1.51
USP40-202ENST00000409945 SPTAN1Q13813 2472 aaKnown RBP5.63□□□□□ -1.51
USP40-202ENST00000409945 USP9XQ93008 2570 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 A0A0B4J203 849 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 DUXAA6NLW8 204 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 H3BNH8 94 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ANKRD28O15084 1053 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 GYG2O15488 501 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 DIAPH2O60879 1101 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ICOSLGO75144 302 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 TRIM3O75382 744 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 CLDN14O95500 239 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ACTL6AO96019 429 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CLPSP04118 112 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 HIST1H2ABP04908 130 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 LCN1P31025 176 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SOAT1P35610 550 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 UGT3A2Q3SY77 523 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 DNAL1Q4LDG9 190 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CES4AQ5XG92 561 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 TIGD3Q6B0B8 471 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 FIP1L1Q6UN15 594 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 TMEM64Q6YI46 380 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 HIST3H2AQ7L7L0 130 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CHMP1BQ7LBR1 199 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SPATA19Q7Z5L4 167 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 IFNEQ86WN2 208 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 DOLPP1Q86YN1 238 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 TRIML2Q8N7C3 387 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ZNF781Q8N8C0 355 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 COX18Q8N8Q8 333 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 OR2T11Q8NH01 316 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 NEIL3Q8TAT5 605 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 VSTM2LQ96N03 204 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 C20orf27Q9GZN8 174 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 C1orf21Q9H246 121 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SLCO5A1Q9H2Y9 848 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SH2D2AQ9NP31 389 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 EQTNQ9NQ60 294 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ZCCHC3Q9NUD5 404 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 MARCOQ9UEW3 520 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 ATP6V1HQ9UI12 483 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 EXO1Q9UQ84 846 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 C15orf41Q9Y2V0 281 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 PAM16Q9Y3D7 125 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 USP9YO00507 2555 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 DOPEY1Q5JWR5 2465 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 SETXQ7Z333 2677 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 SPENQ96T58 3664 aaKnown RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 A0A1W2PP11 408 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 UPK1AO00322 258 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 HDAC3O15379 428 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 ZNF354AO60765 605 aaPredicted RBP5.62□□□□□ -1.51
USP40-202ENST00000409945 HPNP05981 417 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CT45A8P0DMV1 189 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CT45A9P0DMV2 189 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 CHRNB4P30926 498 aa5.62□□□□□ -1.51
USP40-202ENST00000409945 GABRA3P34903 492 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms