RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TLE4Q04727 773 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 C1QL3Q5VWW1 255 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 TCTN3Q6NUS6 607 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 C5orf46Q6UWT4 87 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SSX8Q7RTT4 187 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 COMMD6Q7Z4G1 85 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 BANPQ8N9N5 519 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RNF128Q8TEB7 428 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SMAP2Q8WU79 429 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SLC45A3Q96JT2 553 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SLC41A2Q96JW4 573 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 MKS1Q9NXB0 559 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ABRACLQ9P1F3 81 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SLC17A6Q9P2U8 582 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 FBXO7Q9Y3I1 522 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RPP14O95059 124 aaKnown RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 HBE1P02100 147 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 H1F0P07305 194 aaKnown RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RAB40ALP0C0E4 278 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 DHRS4L1P0CG22 281 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RD3LP0DJH9 198 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 FCER1GP30273 86 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ACVR1BP36896 505 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 PCP4P48539 62 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SNU13P55769 128 aaKnown RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 PFN3P60673 137 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 GANABQ14697 944 aaKnown RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ADIRFQ15847 76 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SFRP4Q6FHJ7 346 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 C22orf42Q6IC83 251 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 IGFN1Q86VF2 1251 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 CMIPQ8IY22 773 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 OR13J1Q8NGT2 312 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 OR10Z1Q8NGY1 313 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ST8SIA4Q92187 359 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 HOXB13Q92826 284 aaPredicted RBP6.71□□□□□ -1.34
SCN9A-202ENST00000409435 RAB1CQ92928 201 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SMIM12Q96EX1 92 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 TXNDC15Q96J42 360 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 PIMREGQ9BSJ6 248 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 GCM1Q9NP62 436 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 ACKR4Q9NPB9 350 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 SLC22A11Q9NSA0 550 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 B3GNT2Q9NY97 397 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 COPS3Q9UNS2 423 aa6.71□□□□□ -1.34
SCN9A-202ENST00000409435 A0A1W2PQF6 199 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ZNF264O43296 627 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 OLFM2O95897 454 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CD3GP09693 182 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 FGF7P21781 194 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 PRPH2P23942 346 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ETV6P41212 452 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 HLCSP50747 726 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 DUSP2Q05923 314 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 PLA2G7Q13093 441 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 PDZK1IP1Q13113 114 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 IKZF1Q13422 519 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 HFEQ30201 348 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 HACD4Q5VWC8 232 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 TMEM64Q6YI46 380 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 GCNT2Q8N0V5 402 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 TMEM104Q8NE00 496 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 SLAMF9Q96A28 289 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 TMEM18Q96B42 140 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CRLF2Q9HC73 371 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 LYRM4Q9HD34 91 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 PURGQ9UJV8 347 aaKnown RBP6.7□□□□□ -1.34
SCN9A-202ENST00000409435 SLC6A5Q9Y345 797 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 PRELID3BQ9Y3B1 194 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 HPRP00739 348 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ARAFP10398 606 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 RPS5P46782 204 aaKnown RBP6.7□□□□□ -1.34
SCN9A-202ENST00000409435 HTR5AP47898 357 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CAV2P51636 162 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 LCN6P62502 163 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 BAK1Q16611 211 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 DUSP7Q16829 419 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ADGRD1Q6QNK2 874 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CAMKMTQ7Z624 323 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CCDC71LQ8N9Z2 235 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ZBTB44Q8NCP5 570 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 PXT1Q8NFP0 134 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 OR5M8Q8NGP6 311 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 OR10K1Q8NGX5 313 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 C2CD4CQ8TF44 421 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ELP4Q96EB1 424 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 ZNF382Q96SR6 550 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 GPR22Q99680 433 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 SARGQ9BW04 601 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 OR10A2Q9H208 303 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 TMEM181Q9P2C4 612 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 LSM5Q9Y4Y9 91 aaKnown RBP6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CACNG2Q9Y698 323 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 V9GYS6 101 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 SMIM30A4D0T7 59 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 IGLV3-27P01718 113 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 RPL7P18124 248 aaKnown RBP6.7□□□□□ -1.34
SCN9A-202ENST00000409435 HTR1EP28566 365 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CRABP1P29762 137 aa6.7□□□□□ -1.34
SCN9A-202ENST00000409435 CASP3P42574 277 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms