RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 TAS2R41P59536 307 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 KRT80Q6KB66 452 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 ERICH5Q6P6B1 374 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 LRFN4Q6PJG9 635 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 HIST3H2AQ7L7L0 130 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 SVOPLQ8N434 492 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 POU5F2Q8N7G0 328 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 PCYOX1LQ8NBM8 494 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 TMEM255BQ8WV15 326 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 HIST1H2ACQ93077 130 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 CCDC134Q9H6E4 229 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 GID8Q9NWU2 228 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 GLTPQ9NZD2 209 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 GMPR2Q9P2T1 348 aaKnown RBP16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 RIMS3Q9UJD0 308 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 FKBP7Q9Y680 259 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 CAPN7Q9Y6W3 813 aa16.68■□□□□ 0.26
SMARCB1-204ENST00000407422 BLOC1S5-TXNDC5H3BN57 136 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 hCG_2039718K7EN88 272 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 CSF3P09919 207 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 PATE4P0C8F1 98 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 NPR2P20594 1047 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 GIPRP48546 466 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 PTDSS1P48651 473 aaKnown RBP16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 LRRC23Q53EV4 343 aaPredicted RBP16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 CYBRD1Q53TN4 286 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 NANOGNBQ7Z5D8 188 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 ZCCHC24Q8N2G6 241 aaKnown RBP16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 IL17RDQ8NFM7 739 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 FGFBP3Q8TAT2 258 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 ZNF566Q969W8 418 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 RCN3Q96D15 328 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 C20orf141Q9NUB4 165 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 TMEM129A0AVI4 362 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 FAM220BPB1ANY3 271 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 MT-ND1P03886 318 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 KDELR2P33947 212 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 RAB1AP62820 205 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 SNTB2Q13425 540 aaKnown RBP16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 DAG1Q14118 895 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 SPATA21Q7Z572 469 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 SKA3Q8IX90 412 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 SLC25A44Q96H78 314 aaPredicted RBP16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 DOK1Q99704 481 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 MDFIQ99750 246 aa16.67■□□□□ 0.26
SMARCB1-204ENST00000407422 SH3PXD2BA1X283 911 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 A8MV72 311 aaPredicted RBP16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 VWC2LB2RUY7 222 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 OR5F1O95221 314 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 F13BP05160 661 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 PGA4P0DJD7 388 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 PGA3P0DJD8 388 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 ZNF35P13682 527 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 FUT1P19526 365 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 USF1P22415 310 aaPredicted RBP16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 NR4A1P22736 598 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 PPOXP50336 477 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 PDLIM4P50479 330 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 VLDLRP98155 873 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 RUNX1T1Q06455 604 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 RPL18Q07020 188 aaKnown RBP16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 CARTPTQ16568 116 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 MSMPQ1L6U9 139 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 C6orf52Q5T4I8 152 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 OR2T12Q8NG77 320 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 FOXN4Q96NZ1 517 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 CMTM6Q9NX76 183 aa16.66■□□□□ 0.26
SMARCB1-204ENST00000407422 OR7A10O76100 309 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 BCL10O95999 233 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 IFNA14P01570 189 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 IGFBP1P08833 259 aaPredicted RBP16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 RBM34P42696 430 aaKnown RBP16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 PIWIL3Q7Z3Z3 882 aaKnown RBP16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 HIPK1Q86Z02 1210 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 MICU2Q8IYU8 434 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 CDK20Q8IZL9 346 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 SLC22A24Q8N4F4 322 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 TMEM239Q8WW34 195 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 TPD52L3Q96J77 140 aa16.65■□□□□ 0.26
SMARCB1-204ENST00000407422 ELOVL7A1L3X0 281 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 VSTM5A8MXK1 200 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 QDPRP09417 244 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 FUT4P22083 530 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 AQP2P41181 271 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 GGTLC2Q14390 218 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 RAB39AQ14964 217 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 HSP90B2PQ58FF3 399 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 ZNF584Q8IVC4 421 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 SGTBQ96EQ0 304 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 ZNF347Q96SE7 839 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 SH3GL3Q99963 347 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 POLR2J2Q9GZM3 115 aaKnown RBP16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 POLR2J3Q9H1A7 115 aaKnown RBP16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 TMEM38BQ9NVV0 291 aa16.64■□□□□ 0.25
SMARCB1-204ENST00000407422 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.63■□□□□ 0.251e-6■■■□□ 17.8
SMARCB1-204ENST00000407422 SLC22A2O15244 555 aa16.63■□□□□ 0.25
SMARCB1-204ENST00000407422 DHHO43323 396 aa16.63■□□□□ 0.25
SMARCB1-204ENST00000407422 PIP5K1CO60331 668 aa16.63■□□□□ 0.25
SMARCB1-204ENST00000407422 UBL3O95164 117 aa16.63■□□□□ 0.25
SMARCB1-204ENST00000407422 RAB36O95755 333 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms