RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 KIAA0040Q15053 153 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CPSF6Q16630 551 aaKnown RBP eCLIP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TATDN3Q17R31 274 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C4orf17Q53FE4 359 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SPOUT1Q5T280 376 aaKnown RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TMEM236Q5W0B7 351 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 DOK6Q6PKX4 331 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SHFQ7M4L6 423 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 MFSD4AQ8N468 514 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 NPRL2Q8WTW4 380 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SMIM10Q96HG1 83 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 ZNF300Q96RE9 604 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TIMM29Q9BSF4 260 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C1orf43Q9BWL3 253 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SUCNR1Q9BXA5 334 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C1QTNF2Q9BXJ5 285 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SMG9Q9H0W8 520 aaKnown RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 FKRPQ9H9S5 495 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 ACOT13Q9NPJ3 140 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SLC25A37Q9NYZ2 338 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SPG21Q9NZD8 308 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TMEFF2Q9UIK5 374 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 FBXO7Q9Y3I1 522 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TDRD15B5MCY1 1934 aaKnown RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 MYADML2A6NDP7 307 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 LOC730098B7Z3J9 87 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CDC14BO60729 498 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 UPK1BO75841 260 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 PRAMEF1O95521 474 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C6orf47O95873 294 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TGFB1P01137 390 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C8GP07360 202 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 OR8U8P0C7N1 319 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SLC35G4P0C7Q5 338 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 PET100P0DJ07 73 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CR2P20023 1033 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 S1PR1P21453 382 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 RGRP47804 291 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 FAM3AP98173 230 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SKP2Q13309 424 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 UBXN2BQ14CS0 331 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 MAD2L1BPQ15013 274 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TIMM50Q3ZCQ8 353 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 PRSS55Q6UWB4 352 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 RASSF6Q6ZTQ3 369 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 OR8U1Q8NH10 309 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 RHBDD1Q8TEB9 315 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 FBLIM1Q8WUP2 373 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SKA2Q8WVK7 121 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 EID2BQ96D98 161 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 PEX11GQ96HA9 241 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TMEM43Q9BTV4 400 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 MS4A7Q9GZW8 240 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 NUAK2Q9H093 628 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 S1PR5Q9H228 398 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 IKZF5Q9H5V7 419 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SLC6A5Q9Y345 797 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 A3GALT2U3KPV4 340 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TET1Q8NFU7 2136 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TRBV11-1A0A0K0K1C0 115 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 RPS10-NUDT3A0A1W2PQS6 291 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C2orf78A6NCI8 922 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 C5orf58C9J3I9 102 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 M0QXV9 152 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SELENOFO60613 162 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CEACAM5P06731 702 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CPN1P15169 458 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CTSKP43235 329 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 RAB5CP51148 216 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 KCNQ1P51787 676 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TDGF1P3P51864 188 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 RPS24P62847 133 aaKnown RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 EXOC3L2Q2M3D2 409 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 GPRC6AQ5T6X5 926 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 KDM4DQ6B0I6 523 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TEX261Q6UWH6 196 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 SERPINA11Q86U17 422 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CALHM3Q86XJ0 350 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 LRRC56Q8IYG6 542 aaPredicted RBP6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 OR4F15Q8NGB8 312 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TERB2Q8NHR7 220 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 GPR151Q8TDV0 419 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 UBASH3BQ8TF42 649 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 TM4SF18Q96CE8 201 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 LHX9Q9NQ69 397 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 ARL15Q9NXU5 204 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 IL17CQ9P0M4 197 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 UBQLN2Q9UHD9 624 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 U3KQ87 197 aa6.03□□□□□ -1.44
TM9SF4-202ENST00000398022 CLIC1O00299 241 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 RP2O75695 350 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 PPIBP23284 216 aaKnown RBP6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 GDF5P43026 501 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 SELENOTP62341 195 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 C3orf38Q5JPI3 329 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 ZNF621Q6ZSS3 439 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 TMEM179BQ7Z7N9 219 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 SNX29P2Q8IUI4 249 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 MSRB3Q8IXL7 192 aa6.02□□□□□ -1.45
TM9SF4-202ENST00000398022 OR5L2Q8NGL0 311 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms